BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30678 (647 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0) 30 1.9 SB_34516| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9 SB_50463| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3 SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34) 27 9.9 SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28) 27 9.9 SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9 >SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0) Length = 808 Score = 29.9 bits (64), Expect = 1.9 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +1 Query: 145 VPVPHDIPQAPGKPEENAT 201 +P PH I QA G+PE AT Sbjct: 371 IPTPHGITQAQGRPENTAT 389 >SB_34516| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 814 Score = 29.9 bits (64), Expect = 1.9 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = +1 Query: 415 VPFLNQLKLYQNTRQKLLKKVKQARQLKPKKRCDHSEIRTCQIY*SPHTHGT 570 +P L+ + KL+ + +R+L K RC H+ + C+++ SP T T Sbjct: 762 LPTCQTTMLFSECQTKLVCNLL-SRKLMAKCRCTHALMMACKVFSSPSTKAT 812 >SB_50463| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 136 Score = 29.1 bits (62), Expect = 3.3 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 160 DIPQAPGKPEENATAVQPTKQNTTSAVDTKT 252 D PGK E + T QP +TT ++DTK+ Sbjct: 36 DYLHLPGKDERDDTPQQPVTVDTTPSLDTKS 66 >SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34) Length = 686 Score = 27.5 bits (58), Expect = 9.9 Identities = 9/30 (30%), Positives = 21/30 (70%) Frame = +1 Query: 427 NQLKLYQNTRQKLLKKVKQARQLKPKKRCD 516 ++++L N + ++ +KQA ++PK++CD Sbjct: 623 DEVELEANKDETIILAIKQADYVRPKQKCD 652 >SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28) Length = 1643 Score = 27.5 bits (58), Expect = 9.9 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +1 Query: 160 DIPQAPGKPEENATAVQPTKQNTTSAVDTKTE 255 D+P+ P +A A P K+ +AVD TE Sbjct: 287 DLPKTPDNTRASALASPPAKECVLAAVDMDTE 318 >SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1925 Score = 27.5 bits (58), Expect = 9.9 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -3 Query: 639 QETRVRMIPPTKLGPSNALACTVGSMCVGASVD 541 + R +++ PT L PSN+L M VGA D Sbjct: 312 ERRRKQLLKPTGLAPSNSLDIAKCDMIVGAEED 344 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,743,256 Number of Sequences: 59808 Number of extensions: 277755 Number of successful extensions: 775 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 701 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 775 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1645141000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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