Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30678
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)                     30   1.9  
SB_34516| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_50463| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)           27   9.9  
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)           27   9.9  
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
          Length = 808

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 145 VPVPHDIPQAPGKPEENAT 201
           +P PH I QA G+PE  AT
Sbjct: 371 IPTPHGITQAQGRPENTAT 389


>SB_34516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 814

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 415 VPFLNQLKLYQNTRQKLLKKVKQARQLKPKKRCDHSEIRTCQIY*SPHTHGT 570
           +P      L+   + KL+  +  +R+L  K RC H+ +  C+++ SP T  T
Sbjct: 762 LPTCQTTMLFSECQTKLVCNLL-SRKLMAKCRCTHALMMACKVFSSPSTKAT 812


>SB_50463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 160 DIPQAPGKPEENATAVQPTKQNTTSAVDTKT 252
           D    PGK E + T  QP   +TT ++DTK+
Sbjct: 36  DYLHLPGKDERDDTPQQPVTVDTTPSLDTKS 66


>SB_42288| Best HMM Match : Transglut_N (HMM E-Value=9.2e-34)
          Length = 686

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = +1

Query: 427 NQLKLYQNTRQKLLKKVKQARQLKPKKRCD 516
           ++++L  N  + ++  +KQA  ++PK++CD
Sbjct: 623 DEVELEANKDETIILAIKQADYVRPKQKCD 652


>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
          Length = 1643

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 160 DIPQAPGKPEENATAVQPTKQNTTSAVDTKTE 255
           D+P+ P     +A A  P K+   +AVD  TE
Sbjct: 287 DLPKTPDNTRASALASPPAKECVLAAVDMDTE 318


>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1925

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 639 QETRVRMIPPTKLGPSNALACTVGSMCVGASVD 541
           +  R +++ PT L PSN+L      M VGA  D
Sbjct: 312 ERRRKQLLKPTGLAPSNSLDIAKCDMIVGAEED 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,743,256
Number of Sequences: 59808
Number of extensions: 277755
Number of successful extensions: 775
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)