Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30678
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49909-7|CAA90110.1|  158|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z75542-2|CAA99862.2|  712|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical p...    27   8.7  
U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plu...    27   8.7  
AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.      27   8.7  
AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.      27   8.7  

>Z49909-7|CAA90110.1|  158|Caenorhabditis elegans Hypothetical
           protein C14A4.6 protein.
          Length = 158

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -3

Query: 627 VRMIPPTKL---GPSNALACTVGSMCVGASVDLASSDFGVVASLFWLQLTSLFHFF 469
           +RM+P   +   G   A+ C V SM +  S +  + DFG +    +  + +L H F
Sbjct: 72  IRMLPYAAIECIGSILAIICYVISMAISISSEEVTDDFGFLVVAIFCFIIALIHVF 127


>Z75542-2|CAA99862.2|  712|Caenorhabditis elegans Hypothetical
           protein F55D12.2 protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 424 LNQLKLYQNT-RQKLLKKVKQARQLKPKKRCDHSEI 528
           L QLK Y    +Q L KKV+Q   ++P+K  D  +I
Sbjct: 72  LKQLKFYLRACQQALYKKVRQVLIIQPEKFLDQQKI 107


>Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical
           protein T10C6.4 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 207 NCCCVFFRFTWSLRDIMRNGYCSSQL 130
           NC   FF+F W   +  RN  C ++L
Sbjct: 136 NCSFPFFQFGWVFMEAQRNETCGAKL 161


>U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plus
           homeodomain, axonguidance protein 1 protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 142 TVPVPHDIPQAPGKPEENATAVQPTKQNTTSAVDTKTEI 258
           T P P   P AP  PE     V   + ++    + KTE+
Sbjct: 137 TSPTPTQEPSAPASPEPKIEVVDEPEVSSEVKTEVKTEV 175


>AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 142 TVPVPHDIPQAPGKPEENATAVQPTKQNTTSAVDTKTEI 258
           T P P   P AP  PE     V   + ++    + KTE+
Sbjct: 137 TSPTPTQEPSAPASPEPKIEVVDEPEVSSEVKTEVKTEV 175


>AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 142 TVPVPHDIPQAPGKPEENATAVQPTKQNTTSAVDTKTEI 258
           T P P   P AP  PE     V   + ++    + KTE+
Sbjct: 137 TSPTPTQEPSAPASPEPKIEVVDEPEVSSEVKTEVKTEV 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,518,019
Number of Sequences: 27780
Number of extensions: 216900
Number of successful extensions: 783
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)