Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30676
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.3  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.4  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    26   5.8  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   7.7  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    25   7.7  

>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = -2

Query: 421 EYPISALSNRLFDCSSIYCRLDARRST---GR*AILDRSTPSKMTAMAELRRLETCSPYS 251
           EYP S L    +D +  +   D R      G   IL+R  PSK +      R E  SPY 
Sbjct: 76  EYPKSRLLRVCYDDNGTFKVKDKRGLVYVQGERLILERDAPSKFSIELVEERREPESPY- 134

Query: 250 FTLIF*ETTEKF 215
             L+F   + +F
Sbjct: 135 --LLFFSNSSRF 144


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/47 (23%), Positives = 26/47 (55%)
 Frame = -1

Query: 671 NVVHQVLAHHARVLSARPIRVVVIIDLTCTQIAAFVNLIVRCISLLL 531
           N + +++    + L  RP+ V ++    CT  +A+V+ ++ C+  +L
Sbjct: 115 NSLQKIIKTLEKELDYRPVSVQLVDAYCCTNPSAYVSALLVCLKGML 161


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 275 TRNMFAIQFYINILGNNRKILVP 207
           T N  AI+ Y+++ G N ++L+P
Sbjct: 857 TVNPMAIRSYLDVFGENVRVLIP 879


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -3

Query: 231 KQPKNFGTPKMSTKII*FRKELKIIQCYEIIIRRV 127
           ++P+NF   K   K +  +KE+K ++  ++ IR++
Sbjct: 255 EKPRNFRREKFLKKFLAMQKEIKYLRKRKLQIRKI 289


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 419 LSAIATSSVITQDTTMTAVPITRKYAAHLRNLSIVRIR 532
           +  I T  V++    + +V  TR+Y +  +++SIVR R
Sbjct: 1   MRGIVTRIVLSTQKCLPSVNCTRRYYSKQKDISIVRQR 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,247
Number of Sequences: 5004
Number of extensions: 56761
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)