Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30676
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885...    30   1.5  
10_02_0078 - 4992019-4992594,4993156-4993248,4995984-4996202,499...    29   4.5  
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790...    29   4.5  
02_02_0106 + 6814391-6817007,6817086-6817462                           28   6.0  
10_08_1065 - 22640931-22641114,22641213-22641334,22641512-226416...    28   7.9  
08_01_0637 + 5537421-5539547                                           28   7.9  

>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
            29288625-29288903,29289047-29289122,29289725-29289787,
            29292116-29292164,29292413-29292504,29293017-29293068,
            29293209-29293271,29293382-29293431,29293941-29294016,
            29294444-29294656,29294763-29294869,29294966-29295074,
            29295489-29295689,29295773-29296033,29296154-29296171,
            29296287-29296397,29296755-29297030,29297108-29297382,
            29297814-29298165,29298371-29298655,29298715-29299261,
            29301658-29301781,29301871-29301946,29302062-29302136,
            29302300-29302353,29302833-29302892,29302977-29303093,
            29303228-29303361,29303480-29303682,29303879-29303976,
            29304358-29304461,29304537-29304702,29304803-29304925,
            29305047-29305129,29305217-29305358,29305523-29305549,
            29305784-29305854,29305930-29306518
          Length = 2046

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 555  DQVNKGCNLCTCKVDNDNNAYWSCTQDTCMMSED 656
            DQ   GC++ +C   +DNN Y+ C     ++ E+
Sbjct: 984  DQYEHGCSIISCSFSDDNNVYY-CVGTAYVLPEE 1016


>10_02_0078 -
           4992019-4992594,4993156-4993248,4995984-4996202,
           4996282-4996345,4996429-4996485,4996573-4996671,
           4997296-4997327
          Length = 379

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 368 INAATIEKTIAQCRYWVLSAIAT 436
           +N   IEK I  C+YW+L A+ T
Sbjct: 29  LNKPEIEKLIFWCQYWILVALLT 51


>03_02_0377 -
           7898075-7898605,7900782-7901000,7901079-7901142,
           7901226-7901282,7901373-7901471,7901744-7901793,
           7902378-7902422,7902967-7903062
          Length = 386

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 368 INAATIEKTIAQCRYWVLSAIATSSVITQDTTMTAVP 478
           +N   IE+ I  C+YW+L A+ T      D T++ +P
Sbjct: 82  LNKPEIEQLIFWCQYWILVALMTVMERFGDFTISWLP 118


>02_02_0106 + 6814391-6817007,6817086-6817462
          Length = 997

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +3

Query: 213 QNFSV--VS*NINVKLYGEHVSSRLSSAIAVILLGVLRSRIAQRPVLRRASRRQ 368
           QNF +     NIN  L+G+H++  L SA+A I+L  L S +A   +LRR    Q
Sbjct: 618 QNFPICRARANINKDLFGKHIA--LISAVASIIL--LVSAVAGFMLLRRKKHLQ 667


>10_08_1065 -
           22640931-22641114,22641213-22641334,22641512-22641633,
           22663988-22664051,22664789-22664878,22665039-22665125,
           22665221-22665363,22665400-22665421
          Length = 277

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +3

Query: 528 YEQQTYAPDDQVNKGCNLCTCKVDNDNNAYWSCTQDTCMMSEDLVNDVN 674
           Y  +  A D Q   GCNL  CK     N+      D  +  +D+ +DV+
Sbjct: 110 YTDRRSAADQQQAGGCNLPICKTTKQGNS----VDDDAIADDDVWDDVS 154


>08_01_0637 + 5537421-5539547
          Length = 708

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 519 ILRFLRWAAYFLVIGTAVIVV 457
           +LRF  W+AY +  GTA+ V+
Sbjct: 44  VLRFFIWSAYMMADGTAIYVL 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,188,773
Number of Sequences: 37544
Number of extensions: 346712
Number of successful extensions: 903
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)