Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30676
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17330.1 68416.m02215 expressed protein contains Pfam profile...    29   2.9  
At1g30300.1 68414.m03705 expressed protein similar to putative h...    29   3.8  
At1g13750.1 68414.m01614 calcineurin-like phosphoesterase family...    29   3.8  
At1g04770.1 68414.m00473 male sterility MS5 family protein simil...    29   3.8  

>At3g17330.1 68416.m02215 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 595

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -1

Query: 332 SNSGPEYAKQDDSNGRTKTTRNMFAIQFYINILGN----NRKILVPQKCQQKLFNLEKNS 165
           + +G  Y  + +   RT+ +RN   ++ Y    GN       ++ P +  ++ F++E + 
Sbjct: 210 NTTGSTYTSEQNRGSRTRRSRNQLIVKAYTTKAGNADAEGNIVINPDRYNKEDFSIEYSD 269

Query: 164 K*FSVMK 144
             F V+K
Sbjct: 270 ARFFVIK 276


>At1g30300.1 68414.m03705 expressed protein similar to putative
           hydrolase GI:7270684 from [Arabidopsis thaliana];
           similar to PhnP protein (GI:15620485) [Rickettsia
           conorii]
          Length = 324

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +1

Query: 358 PDDNKCCYNRKDDCSVPILGTLCYC---DEFCDHTRHHDDCCPDYKKVCSPPQK-PQYRA 525
           P +N    + +D  ++  LGT C     +  C   R  + C    + +  PP+K P YR 
Sbjct: 7   PSENGSVTSDRDRSALIFLGTGCSSAVPNAMCLIQRSDNPCYVCSQSLSIPPEKNPNYRG 66

Query: 526 NTS 534
           NTS
Sbjct: 67  NTS 69


>At1g13750.1 68414.m01614 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 613

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 448 HTRHHDDCCPDYKKVCSPPQKPQYRA 525
           H  +++  CP Y+ VC+  +K  Y+A
Sbjct: 500 HAHNYERTCPVYQSVCTSHEKSNYKA 525


>At1g04770.1 68414.m00473 male sterility MS5 family protein similar
           to male sterility MS5 [Arabidopsis thaliana] GI:3859112;
           contains Pfam profile PF00515 TPR Domain
          Length = 303

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 492 MQPTSETSVSCEYEQ-QTYAPDDQVNKGCNLCTCKV 596
           MQ    T+    Y + Q   PD   NK CNLCTC +
Sbjct: 171 MQLMDYTAAEAVYRKAQLIEPD--ANKACNLCTCLI 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,127,520
Number of Sequences: 28952
Number of extensions: 290428
Number of successful extensions: 788
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)