Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30675X
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              137   5e-33
SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7)                28   3.6  
SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)                28   4.8  
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)                    27   6.4  
SB_6214| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.4  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  137 bits (331), Expect = 5e-33
 Identities = 61/85 (71%), Positives = 73/85 (85%)
 Frame = +1

Query: 7   RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 186
           +V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  V
Sbjct: 26  KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85

Query: 187 HSRARVRKNTEARRKGRHCGFGKEE 261
           HSRARVRK  EAR KGRH G GK +
Sbjct: 86  HSRARVRKADEARSKGRHSGHGKRK 110



 Score =  115 bits (276), Expect = 2e-26
 Identities = 53/79 (67%), Positives = 61/79 (77%)
 Frame = +3

Query: 255 RRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGSVFKNKRVLME 434
           R+GTANARMPQK +W                AKKID H+YHSLYMK+KG+VFKNKRVLME
Sbjct: 109 RKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGNVFKNKRVLME 168

Query: 435 YIHRKKAEKARTKMLSDQA 491
           YIH+KKAEKAR+K+LSDQA
Sbjct: 169 YIHKKKAEKARSKLLSDQA 187


>SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7)
          Length = 381

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -1

Query: 322 LKTLCLCTHSSFCGIRALAVPLLYQSHSDDPFYVL---LCFCGHE--RGSVLLQ 176
           L+ LC C HS+  G   L   L Y  HS     +L   LC+ GH    G++LL+
Sbjct: 91  LRALCYCGHSAIVG-TLLLWALCYYGHSAITGTLLLRALCYYGHSAITGTLLLR 143


>SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)
          Length = 1578

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -2

Query: 345 FCTSGAIFLKPFVFVPIV--PSVAYAHWLYLFFTKATVTTLSTCFCVFADTSAGVYCYRF 172
           +CT   I+++P         P V ++     +  + TV+T  T    F  T+ G+Y    
Sbjct: 236 YCTKSVIYVRPDEAATFGWDPHVVFSDNGIAYPRQVTVSTPDTAH--FVKTTVGLYKIEN 293

Query: 171 LDDETILDHLTDVL 130
             ++ I+  +TDVL
Sbjct: 294 AKEQVIVPEVTDVL 307


>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
          Length = 430

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 121 NSRQNIRKMIKDGLVIKK--PVAVHSRARVRKNTEARRKGRHCG-FGKEEVQPMR 276
           +S  NIRK IKDG   K   P    S  +VRK +  RR   +     K E +P++
Sbjct: 95  SSNTNIRKRIKDGDASKSNVPQRTTSHDQVRKVSGQRRHSTYTSQVKKHEQKPVK 149


>SB_6214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 666

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 199 RVRKNTEARRKGRHCGFGKEEV 264
           R +K++  RRK  HCGF  EE+
Sbjct: 81  RKKKDSTTRRKVYHCGFVPEEL 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,937,028
Number of Sequences: 59808
Number of extensions: 334233
Number of successful extensions: 985
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)