Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30675X
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   124   5e-29
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    39   0.002
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.34 
Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical ...    27   5.6  
Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U42835-1|AAA83585.1|   87|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine re...    27   9.8  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  124 bits (298), Expect = 5e-29
 Identities = 52/80 (65%), Positives = 70/80 (87%)
 Frame = +1

Query: 16  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 195
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 196 ARVRKNTEARRKGRHCGFGK 255
            R R+  EARRKGRH G+GK
Sbjct: 61  FRAREYEEARRKGRHTGYGK 80



 Score = 93.9 bits (223), Expect = 6e-20
 Identities = 43/79 (54%), Positives = 53/79 (67%)
 Frame = +3

Query: 255 RRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGSVFKNKRVLME 434
           RRGTANARMP+K LW                AKK+D+HLYH LY++AKG+ FKNK+ L+E
Sbjct: 81  RRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIE 140

Query: 435 YIHRKKAEKARTKMLSDQA 491
           YI +KK E  R K L+DQA
Sbjct: 141 YIFKKKTENKRAKQLADQA 159


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = -2

Query: 327 IFLKPFVFVPIVPSVAYAHWLYLFFTKATVTT-LSTCFCVFADTSAGVYCYRFLDDETIL 151
           IF++PF    IV    +  W   F   A +   ++T FC+FAD S   +  R  DD+  +
Sbjct: 402 IFIEPFFVNMIVTDDTFTDWRNCFLAHAGLLLFVNTIFCLFADASPAKWT-RLQDDDVAI 460

Query: 150 DHLTDVLSGVGVCDLIDFI 94
           +   +  SG  + D+I F+
Sbjct: 461 EEEKEEYSG-SIEDIIKFL 478


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 112  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 246
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>Z78013-8|CAN99686.1|  373|Caenorhabditis elegans Hypothetical
           protein F15B9.10 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 294 VPSVAYAHWLYLFFTKATVTTLSTCFCVF 208
           +PS+  + WL++F     + TL  C C++
Sbjct: 214 LPSILQSKWLWIFVIGIVLPTLCCCCCIY 242


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 124 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 237
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +1

Query: 67   GKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKG-RHC 243
            G    W++PN   ++  T  + N+   I   + I K + +    R+  + +  +   R  
Sbjct: 1159 GYDHAWVNPNSKLKLRATLGQCNLASSIVSDMNISKTLCIFESCRLYMSNDLTKDAVRFE 1218

Query: 244  GFGKEEVQPMR 276
            G+G ++V P +
Sbjct: 1219 GYGTQKVSPKK 1229


>AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.8a protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 364 LSIFLAVLYFRSNFLK 317
           L++ LA++YFRSNF K
Sbjct: 8   LAVILAIIYFRSNFSK 23


>Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical
           protein W01D2.4 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
 Frame = -2

Query: 396 SPSCRVSGIDACQSSWQFCTSGAIFLKPFVFVPIVPSVAYAHWLY-LFFTKATVTTLSTC 220
           S +C +  I+ C    Q      +F K  VF P+V  +  ++ +Y  FFTKA V + +  
Sbjct: 124 SLACILLAIERCAEINQQFPLEFLFRKS-VF-PVVAFLLLSYTIYAFFFTKALVFS-AEA 180

Query: 219 FCVFADTSAGVYCYRFLDDETILDHLTDVLSGVGVCDLIDFIWIQPHLLF 70
            C F D   G     +      +++       VG+C +I ++++   L+F
Sbjct: 181 SCWFFDPMIGKDASLYHSYPHSINNF-----AVGICTIILYLYLSYRLIF 225


>Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical
           protein F22B8.1 protein.
          Length = 359

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 285 VAYAHWLYLFFTKATVTTLSTCFCVFADTSAGVYC 181
           + +AH+LY +      T LS+CF  +    +  YC
Sbjct: 118 ILHAHFLYRYMVLFRSTFLSSCFIPYGIICSVSYC 152


>Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical
           protein F20E11.7 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 40  RLAASVMRCGKKKVWLDPNEI 102
           ++A + + CG  K+W DPN I
Sbjct: 171 QIAETSVTCGDDKIWQDPNGI 191


>U42835-1|AAA83585.1|   87|Caenorhabditis elegans Hypothetical
           protein C04F6.2 protein.
          Length = 87

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 230 FLRASVFLRTRARECTATGFLMTRPSLIILRMFCLELVFAISLISFGSN 84
           F   +VFL  + +      +L  +P+L+    F ++L   I L+ FG N
Sbjct: 32  FPGTNVFLYLKHKASKTFAYLSGKPALMNFISFVVQLACCIFLLDFGVN 80


>AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine
           receptor, class t protein6 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -2

Query: 342 CTSGAIFLKPFVFVPIVPSVAYAHWLYLFFTKATVTTLSTCFCVFADTSAGVYCY 178
           CT G ++L  ++   ++  + Y+   +L+ TK  +   +   CVF  T AG+Y +
Sbjct: 210 CT-GTLYL--YLSYNLLFKLGYSTSTWLYKTKRQIIFQAVILCVFHATVAGLYSF 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,523,783
Number of Sequences: 27780
Number of extensions: 244787
Number of successful extensions: 784
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)