Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30675X
(493 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 124 4e-29
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 122 2e-28
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 121 3e-28
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 46 2e-05
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 2.2
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 3.9
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil... 28 3.9
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 28 3.9
At5g41490.1 68418.m05038 F-box family protein contains Pfam prof... 27 9.1
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)... 27 9.1
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 27 9.1
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 124 bits (298), Expect = 4e-29
Identities = 54/82 (65%), Positives = 67/82 (81%)
Frame = +1
Query: 16 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 195
M SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 196 ARVRKNTEARRKGRHCGFGKEE 261
+R R EA+RKGRH G+GK +
Sbjct: 61 SRARALNEAKRKGRHSGYGKRK 82
Score = 94.3 bits (224), Expect = 4e-20
Identities = 44/78 (56%), Positives = 52/78 (66%)
Frame = +3
Query: 255 RRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGSVFKNKRVLME 434
R+GT AR+P K LW +KKIDRH+YH +YMK KG+VFKNKRVLME
Sbjct: 81 RKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLME 140
Query: 435 YIHRKKAEKARTKMLSDQ 488
IH+ KAEKAR K L+DQ
Sbjct: 141 SIHKMKAEKAREKTLADQ 158
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 122 bits (293), Expect = 2e-28
Identities = 54/82 (65%), Positives = 67/82 (81%)
Frame = +1
Query: 16 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 195
M SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 196 ARVRKNTEARRKGRHCGFGKEE 261
+R RK A+ KGRH G+GK +
Sbjct: 61 SRARKMKIAKMKGRHSGYGKRK 82
Score = 93.5 bits (222), Expect = 7e-20
Identities = 43/78 (55%), Positives = 51/78 (65%)
Frame = +3
Query: 255 RRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGSVFKNKRVLME 434
R+GT AR+P K LW KKID+H+YH +YM+ KG+VFKNKRVLME
Sbjct: 81 RKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLME 140
Query: 435 YIHRKKAEKARTKMLSDQ 488
IH+ KAEKAR K LSDQ
Sbjct: 141 SIHKSKAEKAREKTLSDQ 158
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 121 bits (291), Expect = 3e-28
Identities = 52/82 (63%), Positives = 69/82 (84%)
Frame = +1
Query: 16 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 195
M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 196 ARVRKNTEARRKGRHCGFGKEE 261
+R R+ A+RKGRH G+GK +
Sbjct: 61 SRARQLNIAKRKGRHSGYGKRK 82
Score = 95.9 bits (228), Expect = 1e-20
Identities = 45/78 (57%), Positives = 51/78 (65%)
Frame = +3
Query: 255 RRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGSVFKNKRVLME 434
R+GT AR+P K LW KKIDRH+YH +YMK KG+VFKNKRVLME
Sbjct: 81 RKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLME 140
Query: 435 YIHRKKAEKARTKMLSDQ 488
IH+ KAEKAR K LSDQ
Sbjct: 141 SIHKSKAEKAREKTLSDQ 158
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +3
Query: 351 KKIDRHLY-HSLYMKAKGSVFKNKRVLMEYIHRKKAEK 461
KKID+ +Y H ++MK KG V+KNK VLME +H+ E+
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 2.2
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -1
Query: 487 WSLSIFVLAFSAFFLWMYSMSTRL 416
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 176 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 81
GFL P +++L M + +S+IS+ NH
Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33
>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
{Homo sapiens}; contains Pfam profile PF02127:
Aminopeptidase I zinc metalloprotease (M18)
Length = 526
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 92 GSNHTFFLPHRITEAASLFCSLRELI 15
G+N+ F R+ AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 348 AKKIDRHLYHSLYMKAKGSVFKNKRVL 428
A K+++ +Y Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895
>At5g41490.1 68418.m05038 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 387
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -2
Query: 372 IDACQSSWQFCTSGAIFLKPFVFVPIVPSVAYA---HWLYLFFTK 247
+D SW +S +FLK + P+V S + A H +Y FT+
Sbjct: 195 LDVTSHSWICYSSCGVFLKGNAYWPVVKSSSEANIDHIIYFDFTR 239
>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
family protein low similarity to Swift [Xenopus laevis]
GI:14164561; contains Pfam profiles PF00583:
acetyltransferase, GNAT family, PF00533: BRCA1 C
Terminus (BRCT) domain
Length = 991
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 13 RMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDG 159
+ S+ L++ AS+ K++ + N +EIA T+ Q+ K KDG
Sbjct: 248 KCSTPGLKRSWEASLSSLQSKRIRANNNNNSEIAKTDLAQSSAKQSKDG 296
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 1324
Score = 26.6 bits (56), Expect = 9.1
Identities = 19/63 (30%), Positives = 24/63 (38%)
Frame = -1
Query: 367 CLSIFLAVLYFRSNFLKTLCLCTHSSFCGIRALAVPLLYQSHSDDPFYVLLCFCGHERGS 188
C S V+ S F S G+R+ A L Y DD F+ L F E +
Sbjct: 1222 CNSANAPVINLESKFAAHAQATEKESHEGVRSNAGALEYNDDDDDAFFATLDFDAMEAQA 1281
Query: 187 VLL 179
LL
Sbjct: 1282 TLL 1284
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,912,470
Number of Sequences: 28952
Number of extensions: 226766
Number of successful extensions: 673
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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