BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30674 (601 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 28 1.2 SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 26 4.8 SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 4.8 SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 6.4 SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 6.4 >SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces pombe|chr 2|||Manual Length = 466 Score = 27.9 bits (59), Expect = 1.2 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +3 Query: 51 AVSPLRLSLSGPSAAALQYYLVPPRATTPSEAPSRAAHRVVQIFIGERQAS 203 A + + ++ P AAA VPP A P+ AP AA VV ++ QA+ Sbjct: 375 AAAAVTTPVAAPVAAAAAAVPVPPPAPAPAAAP--AAEHVVALYDYAAQAA 423 >SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 553 Score = 25.8 bits (54), Expect = 4.8 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -3 Query: 593 FFFLCSKHSYL*YNVVVLFTNKYKFS**KMVNYL 492 FFF+CSK S VLF+ K +S K++ L Sbjct: 41 FFFMCSKFSMNSLKFCVLFSFKTVYSLLKLIKTL 74 >SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual Length = 188 Score = 25.8 bits (54), Expect = 4.8 Identities = 13/49 (26%), Positives = 21/49 (42%) Frame = -1 Query: 463 FLNLLWICVESKILTLTFFL*HVTVSRKFETFDVRATRSHTFTL*NYIY 317 F LL+ + + + F H VS +F + HTFT+ + Y Sbjct: 28 FFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHTFTIEAFFY 76 >SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharomyces pombe|chr 1|||Manual Length = 704 Score = 25.4 bits (53), Expect = 6.4 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -1 Query: 136 GVVARGGTR*YWRAAAEGPD 77 GV+A+ GT+ + AAA G D Sbjct: 95 GVIAKSGTKQFMEAAASGAD 114 >SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 1811 Score = 25.4 bits (53), Expect = 6.4 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -2 Query: 411 FFYDTLRSQENLRLSTFGRHVHIHS 337 F Y TL L ST G +VH H+ Sbjct: 581 FVYHTLNDIPQLNSSTIGSYVHSHN 605 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,296,045 Number of Sequences: 5004 Number of extensions: 43064 Number of successful extensions: 129 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 126 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 129 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 262236260 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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