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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30674
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    28   1.2  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   4.8  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   4.8  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    25   6.4  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   6.4  

>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 51  AVSPLRLSLSGPSAAALQYYLVPPRATTPSEAPSRAAHRVVQIFIGERQAS 203
           A + +   ++ P AAA     VPP A  P+ AP  AA  VV ++    QA+
Sbjct: 375 AAAAVTTPVAAPVAAAAAAVPVPPPAPAPAAAP--AAEHVVALYDYAAQAA 423


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 593 FFFLCSKHSYL*YNVVVLFTNKYKFS**KMVNYL 492
           FFF+CSK S       VLF+ K  +S  K++  L
Sbjct: 41  FFFMCSKFSMNSLKFCVLFSFKTVYSLLKLIKTL 74


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -1

Query: 463 FLNLLWICVESKILTLTFFL*HVTVSRKFETFDVRATRSHTFTL*NYIY 317
           F  LL+  + + +    F   H  VS +F    +     HTFT+  + Y
Sbjct: 28  FFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHTFTIEAFFY 76


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 136 GVVARGGTR*YWRAAAEGPD 77
           GV+A+ GT+ +  AAA G D
Sbjct: 95  GVIAKSGTKQFMEAAASGAD 114


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 411 FFYDTLRSQENLRLSTFGRHVHIHS 337
           F Y TL     L  ST G +VH H+
Sbjct: 581 FVYHTLNDIPQLNSSTIGSYVHSHN 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,045
Number of Sequences: 5004
Number of extensions: 43064
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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