Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30674
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683 34 0.076
05_05_0177 - 22993844-22994617 33 0.13
07_03_1024 - 23360347-23360426,23362575-23362733,23362826-233629... 32 0.31
02_01_0435 - 3164421-3165032 32 0.31
01_01_0761 - 5874953-5876803 30 1.6
08_01_0136 - 1077800-1077811,1077929-1078046,1079410-1079549,107... 29 2.2
04_04_0911 - 29340222-29341103 29 2.2
03_06_0603 + 34999083-34999703,35000092-35000177,35000400-350007... 29 2.2
12_01_0344 + 2647044-2647238,2647452-2647553,2647789-2647911,264... 29 2.8
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 2.8
07_03_0756 - 21272122-21272784 29 3.8
05_07_0291 - 29020032-29020660,29020747-29020817,29021020-290211... 29 3.8
12_02_0848 + 23636478-23638058 28 5.0
10_08_0086 - 14729240-14729494,14730107-14730307 28 5.0
03_02_0845 - 11700830-11701327 28 5.0
01_05_0524 + 22925354-22926229 28 5.0
08_02_0929 + 22694917-22695072,22695399-22695781,22698637-226987... 28 6.6
04_03_0381 - 15163425-15164903 28 6.6
01_05_0285 - 20382305-20382563,20383315-20384504 28 6.6
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 27 8.7
05_03_0635 - 16446805-16447716 27 8.7
05_03_0479 + 14529783-14530613 27 8.7
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969... 27 8.7
>09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683
Length = 625
Score = 34.3 bits (75), Expect = 0.076
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 260 RAPHSTDRHSDH*VHPRAVRSLPLANKYLYNA 165
R P STD H H VHP + S P A+++L +A
Sbjct: 172 RFPSSTDHHRRHKVHPAFLHSAPSADRFLASA 203
>05_05_0177 - 22993844-22994617
Length = 257
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 66 RLSLSGPSAAALQYYLVPPRATTPSEAPS--RAAHRV 170
RL+ S PS LQ LVPP A S +PS R HR+
Sbjct: 33 RLTFSSPSLKDLQSLLVPPHAALSSSSPSPPRVFHRI 69
>07_03_1024 -
23360347-23360426,23362575-23362733,23362826-23362937,
23362963-23363307
Length = 231
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 150 SALRRGWWRAAGLDNTGEPRLRVRTTTAGAATPR 49
+A+RR WWRA + G RL +R AG+A+ R
Sbjct: 61 AAMRRWWWRADPQLHLGRARLLLRRWRAGSASAR 94
>02_01_0435 - 3164421-3165032
Length = 203
Score = 32.3 bits (70), Expect = 0.31
Identities = 28/95 (29%), Positives = 41/95 (43%)
Frame = +3
Query: 33 RDSAVRAVSPLRLSLSGPSAAALQYYLVPPRATTPSEAPSRAAHRVVQIFIGERQASDRA 212
R +A R P S S P Q+ PP+ P+ A + ++H G A+ A
Sbjct: 60 RGAAARTNFPPSTSSSAPPPPPPQHQ--PPQHLPPAAAAATSSHSSTVESWGVTVAAAAA 117
Query: 213 GVDSVIAVPVRGVWGAGPASDVRPASLCESSTSTL 317
++ P R G+ PA+D S C SS+S L
Sbjct: 118 SAGALGLPPPRN-GGSNPAADEDCRSYCGSSSSVL 151
>01_01_0761 - 5874953-5876803
Length = 616
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 45 VRAVSPLRLSLSGPSAAALQYYLVPPRATTPSEAPS 152
+ SPL+L LS AAL+ + PP P + P+
Sbjct: 22 ISIASPLKLRLSASEVAALEAHAPPPPPPPPPDTPT 57
>08_01_0136 -
1077800-1077811,1077929-1078046,1079410-1079549,
1079627-1080313
Length = 318
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +2
Query: 131 HPLRSAESSGAPRCTNIYWRAAGFGPRGGGLSDRCACP 244
HP S + AP T+I +AG G GGG S A P
Sbjct: 83 HPEPSTLFAAAPSLTDILGASAGGGGGGGGESSSAASP 120
>04_04_0911 - 29340222-29341103
Length = 293
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 68 AVVVRTLSRGSPVLSSPAARHHPLRSAESSGAPRCTNIYWRAAGFGPRGGG 220
A T S SP SP+A S +SG+P ++ A+G G GGG
Sbjct: 25 AAAAATASSSSPTSVSPSATASAAASTSASGSPFRSSDGAGASGSGGGGGG 75
>03_06_0603 +
34999083-34999703,35000092-35000177,35000400-35000796,
35000906-35001154,35001522-35001749,35002524-35002973,
35003848-35003961,35004171-35004216,35004408-35004574
Length = 785
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 92 RGSPVLSSPAARHHPLRSAESSGAPRCTNIYWRAAGFGPRGG 217
RG+P + RHH R+ ++ A T +W A G GG
Sbjct: 35 RGAPPCGAALWRHHSGRAVTTAAAAAATGDHWGAEYHGGGGG 76
>12_01_0344 +
2647044-2647238,2647452-2647553,2647789-2647911,
2648066-2648183,2649022-2649347
Length = 287
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 20 GCTAAGQRCTRGVAAPAVVVRTLSRGSPVLSSPAARHHPLRSAESSG 160
G +A + TR V+ V R S +S+P + HP+R+A +G
Sbjct: 162 GVSAYSKYGTRTVSTSLRVCRQEKTSSSGMSNPVQKDHPVRNAHGTG 208
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/65 (32%), Positives = 26/65 (40%)
Frame = +2
Query: 26 TAAGQRCTRGVAAPAVVVRTLSRGSPVLSSPAARHHPLRSAESSGAPRCTNIYWRAAGFG 205
TA+ Q + AP V TL + + A L A + G RCT R AG G
Sbjct: 196 TASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKARCTTFSARLAGVG 255
Query: 206 PRGGG 220
GG
Sbjct: 256 ASAGG 260
>07_03_0756 - 21272122-21272784
Length = 220
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -2
Query: 210 RGPKPAARQ*IFVQRGAPLDSA-LRRGWWRAAGLDNTGEPRLRVRTTTAGAATP 52
RGP+ R R PL +RR A G R+RVR + AGAA P
Sbjct: 40 RGPRLRGRLRRSGARAGPLQQGRVRRAGADGARRRRAGRVRVRVRLSLAGAAAP 93
>05_07_0291 -
29020032-29020660,29020747-29020817,29021020-29021194,
29021451-29021571,29021686-29022036
Length = 448
Score = 28.7 bits (61), Expect = 3.8
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Frame = +3
Query: 54 VSPLRLSLSGPSAAALQY---YLVPPRA------TTPSEAPSRAAHRVVQIF--IGERQA 200
V+ LRLSL+ +AAAL L+PP A T P++ P R A V F +G+ +A
Sbjct: 2 VASLRLSLAAAAAAALAVAVALLLPPLAAAQGETTCPADVPPRGAWMSVASFGGVGDGRA 61
Query: 201 SDRAGVDSVIA 233
+ A +A
Sbjct: 62 LNTAAFARAVA 72
>12_02_0848 + 23636478-23638058
Length = 526
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 235 CLSVECGARGRRRTCAPPRCVNRL 306
C + CGARGRR C P V RL
Sbjct: 354 CGLLRCGARGRRDDCYDPGNVMRL 377
>10_08_0086 - 14729240-14729494,14730107-14730307
Length = 151
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 165 GAPLDSALRRGWWRAAGL 112
G LD LRR WW+ AGL
Sbjct: 45 GMSLDKQLRRWWWQDAGL 62
>03_02_0845 - 11700830-11701327
Length = 165
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 38 QRCTRGVAAPAVVVRTLSRGSPVLSS--PAARHHPLRSAESSGAPRCTNIYWRAA 196
QR RGVAAP VR + S V A + L E++GA Y RAA
Sbjct: 24 QRRGRGVAAPRARVRVSASASTVAPERRAATMYEVLAVEETAGAEEIKAAYRRAA 78
>01_05_0524 + 22925354-22926229
Length = 291
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 103 WRAAAEGPDNDSRSGDTARTALSRRCTSTQR 11
W AAA + R G A TAL RC +R
Sbjct: 112 WPAAAAEAGREERGGGDAMTALEGRCRDARR 142
>08_02_0929 +
22694917-22695072,22695399-22695781,22698637-22698769,
22698870-22699312,22699786-22699864
Length = 397
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +2
Query: 110 SSPAA---RHHPLRSAESSGAPRCTNIYWRAAGFGPRGGGLSDR 232
SSPAA RHHP + SG+ R Y RA G +S R
Sbjct: 76 SSPAAGARRHHPYHAYADSGSDRFHYAYRRAGSGGDATPSVSAR 119
>04_03_0381 - 15163425-15164903
Length = 492
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 237 AQRSLSPPPR--GPKPAARQ*IFVQRGAPLDSALRRGWWRAAG 115
A R++ PP GP P + + V RG+PLD+A+ W+ G
Sbjct: 242 AMRAIFPPVYTVGPLPLHVRHV-VPRGSPLDTAIGSNLWKEQG 283
>01_05_0285 - 20382305-20382563,20383315-20384504
Length = 482
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/76 (30%), Positives = 31/76 (40%)
Frame = +2
Query: 23 CTAAGQRCTRGVAAPAVVVRTLSRGSPVLSSPAARHHPLRSAESSGAPRCTNIYWRAAGF 202
C G R GVA+ V L+ + SSPA A S A N +W + F
Sbjct: 106 CDLLGPRRASGVAS-LVCALALALAAVFASSPAGFVALRFVAGLSLANFVANQHWMSRIF 164
Query: 203 GPRGGGLSDRCACPWS 250
P GL++ A W+
Sbjct: 165 APSAVGLANAVAAGWA 180
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 176 NIYWRAAGFGPRGGGLSDRCACPWS 250
N++ + G G GGG + CPW+
Sbjct: 40 NVFDQEVGVGGEGGGGGEGSGCPWA 64
>05_03_0635 - 16446805-16447716
Length = 303
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 259 APHTPRTGTAITESTPARS-EACR 191
A H PR TAI+E P RS ++CR
Sbjct: 36 ARHGPRNWTAISEEVPGRSGKSCR 59
>05_03_0479 + 14529783-14530613
Length = 276
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +3
Query: 21 DVQRRDSAVRAVSPLRLSLSGPSAAALQYYLVPPRATTPSEAPS 152
D R AV+ PSA A Q L P R TTP + PS
Sbjct: 134 DAALRIKGSHAVTNFPSDSDTPSAKAKQMKLHPRRHTTPDKTPS 177
>03_05_0412 +
23993452-23994068,23996249-23996350,23996799-23996994,
23997075-23997259,23997394-23997498,23997625-23997722,
23997832-23998067,23998314-23998382,23999768-23999833,
24000513-24000611,24000688-24000750
Length = 611
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -2
Query: 168 RGAPLDSALRRGWWRAAGLDNTGEPRLRVRTTTAGAATPRVQRCPA 31
RG +A+ RGW AG LR+R + RCPA
Sbjct: 151 RGVMAAAAVSRGWRDCAGRVWRAAEELRLRAAGVSLVGALLPRCPA 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,205,249
Number of Sequences: 37544
Number of extensions: 349258
Number of successful extensions: 1642
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1641
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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