Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30674
(601 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 29 2.2
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 29 2.2
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 29 2.2
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_49291| Best HMM Match : Herpes_UL69 (HMM E-Value=4.5) 28 6.6
SB_4534| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_872| Best HMM Match : CUB (HMM E-Value=3.1e-07) 28 6.6
SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08) 27 8.8
SB_46305| Best HMM Match : SSDP (HMM E-Value=2) 27 8.8
SB_32971| Best HMM Match : PP1_inhibitor (HMM E-Value=3.9) 27 8.8
SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_5262| Best HMM Match : IncA (HMM E-Value=2.1) 27 8.8
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -1
Query: 397 VTVSRKFETFDVRAT-RSHTFTL*NYIYKVLVDDSHSEAGRTSDAGPAPHTPRTGTAITE 221
+T S T D+R+T R H+ I + + S + T+ P PH+P T T T
Sbjct: 1720 LTPSTAGHTIDIRSTNRVHSRAQEGQIPTLSTLKTTSTSTSTTKYIPPPHSPPTTTTTTT 1779
Query: 220 STP 212
+TP
Sbjct: 1780 TTP 1782
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -2
Query: 216 PPRGPKPAARQ*IFVQRGAPLDSALRRGWWRAAGLDNTGEPRLRVRTTTAGAATPRVQR- 40
P K ARQ + + D +R + GL+N +PR+ R + G PR R
Sbjct: 100 PGEEEKETARQDRESRAESSKDEGSKRNTKQGTGLENAEKPRIVNRYSEPGRVKPRDTRL 159
Query: 39 CPAAVHPRS 13
C A + RS
Sbjct: 160 CRADISTRS 168
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -2
Query: 216 PPRGPKPAARQ*IFVQRGAPLDSALRRGWWRAAGLDNTGEPRLRVRTTTAGAATPRVQR- 40
P K ARQ + + D +R + GL+N +PR+ R + G PR R
Sbjct: 100 PGEEEKETARQDRESRAESSKDEGSKRNTKQGTGLENAEKPRIVNRYSEPGRVKPRDTRL 159
Query: 39 CPAAVHPRS 13
C A + RS
Sbjct: 160 CRADISTRS 168
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 298 SHSEAGRTSD-AGPAPHTPRTGTAITESTPARSEACRS 188
S AG T++ + P+ TPRTG+ T S P+ S S
Sbjct: 24 STPRAGSTTNTSAPSTSTPRTGSTTTTSAPSTSTTSNS 61
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 277 TSDAGPAPHTPRTGTAITESTPARSEACRS 188
T+ + P+ TPRTG+ T S P+ S S
Sbjct: 93 TTTSAPSTSTPRTGSTTTTSAPSTSTTSNS 122
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 277 TSDAGPAPHTPRTGTAITESTPARS 203
T+ + P+ TPRTG+ T S P+ S
Sbjct: 77 TTTSAPSTSTPRTGSTTTTSAPSTS 101
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -1
Query: 298 SHSEAGRTSDAGPAPHTPRTGTAITESTPARSEACRSPINICTTRCAARLGASE 137
S S ++ P+ TPRTG+ IT T S +P +R + S+
Sbjct: 115 STSTTSNSTTRAPSTSTPRTGSTITLRTSTTSVMTTTPSTTSISRAGSTTTTSD 168
>SB_49291| Best HMM Match : Herpes_UL69 (HMM E-Value=4.5)
Length = 491
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 129 WRAAGLDNTGEPRLRVRTTTAGAATPR 49
WRA +DN +P+L +R GA+ P+
Sbjct: 39 WRAI-IDNLNKPKLNIRVARPGASYPK 64
>SB_4534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +2
Query: 74 VVRTLSRGSPV-LSSPAARHHPL--RSAESSGAPRCTNI 181
V+R LSRG P+ + P R +PL + AE +G R +++
Sbjct: 198 VIRVLSRGKPIRMKRPVQRLYPLEVKCAEGAGFLRTSSL 236
>SB_872| Best HMM Match : CUB (HMM E-Value=3.1e-07)
Length = 423
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 162 APLDSALRRGWWRAAGLDNTGEPRLRVRTTTAGAATP 52
A D L+RGW+R G T V T GA +P
Sbjct: 96 AECDRTLKRGWYRFTGDAGTKMAETPVETFRCGAHSP 132
>SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08)
Length = 619
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -1
Query: 400 HVTVSRKFETFDVRATRSHTFTL*NYIYKVLVDDSHSEAGRTSDAG 263
H + + FD R + +T N+IY+ DD+ S+ D G
Sbjct: 74 HFETDKDNDVFDTSKRRKNAYTKKNHIYEKNGDDAESDNDDDEDNG 119
>SB_46305| Best HMM Match : SSDP (HMM E-Value=2)
Length = 848
Score = 27.5 bits (58), Expect = 8.8
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Frame = -1
Query: 310 LVDDSHSEAGRTSDAGPAPHTPRT--GTAITE----STPARSEACRSP-INICTTRCAAR 152
+V +G + +P T RT G I E S PA S+ R+P ++IC T AR
Sbjct: 628 IVQQRFKVSGNATRFTRSPETARTPPGVPINEGMQPSLPASSKPDRTPPVSICPTGILAR 687
Query: 151 LGASEGVVARGGTR*YWRAAAEGPDNDSRSGDT 53
+ R T A E + S GD+
Sbjct: 688 AVLANKTTGRNITGISRNALLESLRSSSSDGDS 720
>SB_32971| Best HMM Match : PP1_inhibitor (HMM E-Value=3.9)
Length = 200
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 390 SQENLRLSTFGRHVHIHSHYKTIFTRY 310
SQENLR + GR H H +T + Y
Sbjct: 133 SQENLRTTPRGRSSHFRQHIETKYKLY 159
>SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 678
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 327 FYSVNVCERVARTSKVSNFLETVTCHKKNV 416
FYS+N + + RTSK+S + T+ K +
Sbjct: 548 FYSINGLDTLLRTSKLSGIINTLKTQTKGL 577
>SB_5262| Best HMM Match : IncA (HMM E-Value=2.1)
Length = 597
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -1
Query: 322 IYKVLVDDSHSEAGRTSDAGPAPHTPRTGTAITESTPARSEACRSPINICTTR 164
++++ D S ++ GR+ PHT + E++ +RS +C +PI+ T R
Sbjct: 46 VHRLYPDGSAAKLGRSI----TPHTYEEIRDLGEASLSRSPSCAAPISATTAR 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,008,210
Number of Sequences: 59808
Number of extensions: 356324
Number of successful extensions: 1243
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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