Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30674
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.19 
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   3.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   7.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 249 LHGQAQRSLSPPPRGPKPAAR 187
           L G++Q+S + PP GP PA +
Sbjct: 373 LSGRSQKSTTGPPPGPTPAQK 393


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 177 FVQRGAPLDSALRRGWWRAAGLDNTGEPRLR 85
           F++  +   S L+R W +  G+DN    R +
Sbjct: 19  FIRHQSDRYSKLKRNWRKPKGIDNRVRRRFK 49


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 216 VDSVIAVPVRGVWGAGPASDVRPASLCESS 305
           +   + +PV  + GA  AS+V     CE++
Sbjct: 138 ISKQLHIPVSVLMGANLASEVANEMFCETT 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,342
Number of Sequences: 438
Number of extensions: 3705
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)