Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30674
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43320.1 68418.m05294 casein kinase, putative similar to case...    33   0.19 
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa...    30   1.3  
At1g20990.1 68414.m02627 DC1 domain-containing protein contains ...    29   3.1  
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ...    28   5.4  
At2g01450.1 68415.m00068 mitogen-activated protein kinase, putat...    27   9.5  

>At5g43320.1 68418.m05294 casein kinase, putative similar to casein
           kinase I (CKI2) [Arabidopsis thaliana]
           gi|1103322|emb|CAA55397; contains protein kinase domain,
           Pfam:PF00069
          Length = 480

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -1

Query: 400 HVTVSRKFETFDVRATRSHTFTL*NYIYKVLVDDSHSEAGRTSDAGPAPHTPRTGTAITE 221
           H + SRK     VRAT S  FT  N   +V+  +  S   + +   P P T  + ++ T 
Sbjct: 396 HASSSRKAVVSSVRATSSADFTE-NRSSRVVPSNGRSSTAQRTQLVPDPTTRPSSSSFTR 454

Query: 220 STPARS 203
           + P+R+
Sbjct: 455 AAPSRT 460


>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 683

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 102 GEPRLRVRTTTAGAATPRVQRCPAAVHPRSGQYS 1
           G P+L+ +TTT G  TPR +   + + P S   S
Sbjct: 76  GTPKLKCKTTTTGETTPRNRSLVSLLTPSSSSIS 109


>At1g20990.1 68414.m02627 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain; contains weak hit to Pfam
           PF00569: Zinc finger, ZZ type
          Length = 319

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +2

Query: 98  SPVLSSPAARHHPLRSAESSGAPRCT 175
           SP LSS +  HHPLR   SS A   T
Sbjct: 177 SPSLSSSSLHHHPLRLLPSSSAGSTT 202


>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 716

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 86  LSRGSPVLSSPAARHHPLRSAESSGAPRCTNIYWRAAGFGP 208
           LSR   + S P +    L SAE S +PR T+    +A F P
Sbjct: 471 LSRSGRMKSMPPSNLEDLFSAEGSSSPRFTDSALASAVFSP 511


>At2g01450.1 68415.m00068 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK17) mitogen-activated protein
           kinase (MAPK)(AtMPK17), PMID:12119167
          Length = 486

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
 Frame = -1

Query: 304 DDSHSEAGRTSDAGPAPHTPRTGTAITESTPARSEACRSPI--NICTTR----CAAR-LG 146
           D  H+++   S     P TP T T ++    ++ +   +P+  + C  R    CA+R +G
Sbjct: 421 DSVHAQSSSASVVFTPPQTPNTATGLSSQKASQVDKAATPVKRSACLMRSDSICASRCVG 480

Query: 145 ASEGV 131
            S  V
Sbjct: 481 VSSAV 485


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,119,723
Number of Sequences: 28952
Number of extensions: 233556
Number of successful extensions: 675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)