Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30673
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   2.6  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    24   7.9  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   7.9  

>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +2

Query: 113 YTTNIINVNRTKHRLLIYFKNNINVID 193
           +  + + V ++K ++  +FKNNIN+ +
Sbjct: 391 FVKHYLTVPKSKEKISAFFKNNINLFE 417


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 27  LLVFYLVFITVAELSLIINDH*KGKNTCDIRQT*LM 134
           L  F+LVFI    + L I D+    NT +I    LM
Sbjct: 8   LFYFFLVFIGAQAMDLDITDYQSIDNTVNIMMKDLM 43


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 307 VLKFNLGIL*KKRNKDKCFFNSK*EQYFRNDNNSTKK 197
           VL+    IL KKRN+D+    +  E+ F  +N+ST K
Sbjct: 218 VLRNKKSILLKKRNQDETQLTT--EEDFSANNDSTAK 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,191,969
Number of Sequences: 5004
Number of extensions: 19157
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)