Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30673
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    27   6.9  

>Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical
           protein T21H8.3 protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -3

Query: 235 EQYFRNDNNSTKKHVNNIDIVFEVD*ESVFSSVHINYVCRISHVFLPF*WSLII 74
           EQ+ RN+N  T K V  + I+  V   ++   + +  V R+S  +LP  W  II
Sbjct: 221 EQFQRNENMKTLKQVTPLMILSNV---TIGVYIFVISVFRLSKNYLPVNWYEII 271


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 23/69 (33%), Positives = 33/69 (47%)
 Frame = -3

Query: 271 RNKDKCFFNSK*EQYFRNDNNSTKKHVNNIDIVFEVD*ESVFSSVHINYVCRISHVFLPF 92
           +N DK    S  EQ+ RN+N  T K V  + I+  V   ++   + I  V R+   +LP 
Sbjct: 209 KNIDKHGSTSLSEQFQRNENVKTLKQVTPLLILSNV---TIGVYIFIVSVFRLYKDYLPP 265

Query: 91  *WSLIIRDN 65
            W  II  N
Sbjct: 266 NWYEIIAAN 274


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 23/69 (33%), Positives = 33/69 (47%)
 Frame = -3

Query: 271 RNKDKCFFNSK*EQYFRNDNNSTKKHVNNIDIVFEVD*ESVFSSVHINYVCRISHVFLPF 92
           +N DK    S  EQ+ RN+N  T K V  + I+  V   ++   + I  V R+   +LP 
Sbjct: 209 KNIDKHGSTSLSEQFQRNENVKTLKQVTPLLILSNV---TIGVYIFIVSVFRLYKDYLPP 265

Query: 91  *WSLIIRDN 65
            W  II  N
Sbjct: 266 NWYEIIAAN 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,471,227
Number of Sequences: 27780
Number of extensions: 106237
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)