Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30673
         (408 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22910.1 68416.m02887 calcium-transporting ATPase, plasma mem...    27   4.8  
At1g61640.2 68414.m06946 ABC1 family protein contains Pfam domai...    27   6.4  
At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF038...    27   6.4  

>At3g22910.1 68416.m02887 calcium-transporting ATPase, plasma
            membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)
            identical to SP|Q9LIK7 Potential calcium-transporting
            ATPase 13, plasma membrane-type (EC 3.6.3.8)
            (Ca(2+)-ATPase isoform 13) {Arabidopsis thaliana};
            similar to SP|Q9LF79 Calcium-transporting ATPase 8,
            plasma membrane-type (EC 3.6.3.8) (Ca2+-ATPase, isoform
            8) {Arabidopsis thaliana}; contains InterPro Accession
            IPR006069: Cation transporting ATPase
          Length = 1017

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 264  KTNVFLILNKNNIFAMIIIARRNTSITLILFLK 166
            K NVF  L+KN +F  II+      + ++ FLK
Sbjct: 935  KKNVFKGLHKNRLFIGIIVVTVVLQVVMVEFLK 967


>At1g61640.2 68414.m06946 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 477

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 198 NTSITLILFLK*IKSRCLVRFTLIMFVVYHMYFCLFSGR 82
           N  + ++L L  + S+C+  F  + +V Y  +   FSGR
Sbjct: 435 NALLKMLLVLS-LSSQCIFLFISVTYVTYSCFDSCFSGR 472


>At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF03800:
           Nuf2 family domain; similar to Myosin-like protein NUF2
           (Nuclear filament-containing protein 2) (Nuclear
           division protein nuf2) (Swiss-Prot:Q10173)
           [Schizosaccharomyces pombe]
          Length = 974

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 225 FAMIIIARRNTSITLILFLK*IKSRCLVRFTLIMFVVYHMYF 100
           F ++++       TLI     I  +   RF L+ F+V+H+YF
Sbjct: 746 FMVLVLVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIYF 787


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,713,642
Number of Sequences: 28952
Number of extensions: 85463
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)