Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30672
(620 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 143 2e-35
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 99 3e-22
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 97 2e-21
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 78 1e-15
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 2.9
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 2.9
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 3.8
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 25 6.7
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 25 6.7
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha... 25 8.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 143 bits (346), Expect = 2e-35
Identities = 62/79 (78%), Positives = 70/79 (88%)
Frame = +3
Query: 270 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 449
+GGKYVPRA+L+DLEPGTMDAV+SG +G LFRPDN ++GQSGAGN WAKGHYTEGAEL D
Sbjct: 55 AGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELAD 114
Query: 450 DVLDVVRKECENCDCLQGF 506
VLDVVR+E E CD LQGF
Sbjct: 115 AVLDVVRREAEACDALQGF 133
Score = 91.5 bits (217), Expect = 9e-20
Identities = 36/55 (65%), Positives = 47/55 (85%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEAS 255
MREIVH+QAGQCGNQ+GA FW I++EHG+D G+Y GTS+ Q ER++VY+NEA+
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAA 55
Score = 34.7 bits (76), Expect = 0.011
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 566 KIREEYPDRIMNTYSVVP 619
KIREEYPDR+M T+SV P
Sbjct: 154 KIREEYPDRMMATFSVAP 171
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 99 bits (238), Expect = 3e-22
Identities = 44/82 (53%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GKYVPR+I +DLEP +D VR+G Y LF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKE 113
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
LVD+V D +R+ +NC LQGF
Sbjct: 114 LVDEVTDKIRRIADNCSGLQGF 135
Score = 44.0 bits (99), Expect = 2e-05
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 192
MREI+ + GQ G QIG WE+ EHGI P G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 97.1 bits (231), Expect = 2e-21
Identities = 42/82 (51%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPR+I +DLEP +D VR+G Y LF P+ V G+ A NN+A+GHYT G E
Sbjct: 58 SETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKE 117
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
++D VL+ +R+ +NC LQGF
Sbjct: 118 MIDSVLERIRRMADNCSGLQGF 139
Score = 42.3 bits (95), Expect = 5e-05
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNE 249
MRE++ + GQ G QIG WE+ EHGI P G T + ++ + + Y N+
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGF--PTENSEVHKNNSYLND 51
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 77.8 bits (183), Expect = 1e-15
Identities = 32/78 (41%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Frame = +3
Query: 279 KYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDD 452
+Y+PRAIL+DLEP ++ + S YG L+ P+N + ++ GAGNNWA G Y+ + +D
Sbjct: 59 RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFED 117
Query: 453 VLDVVRKECENCDCLQGF 506
++D++ +E + D L+GF
Sbjct: 118 IMDMIDREADGSDSLEGF 135
Score = 57.6 bits (133), Expect = 1e-09
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = +1
Query: 94 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA 252
REI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R V++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQS 55
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 566 KIREEYPDRIMNTYSVVP 619
++ + YP +I+ TYSV P
Sbjct: 156 RLNDRYPKKIIQTYSVFP 173
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 130 NQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERI 231
N++G E+++E+ +DPT + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 492 NRSSHTPCGLHQGRRRRAQR 433
+R H P G H GR RRA R
Sbjct: 50 SRMDHRPDGYHDGRGRRAYR 69
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 411 AKGHYTEGAELVDDVLDVVRKECENCDCLQ 500
A+GH G ELV D +RK+ EN L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +3
Query: 363 RPDNFVFGQSGAGNNWAKGHYTEGAELVDDVLDVVRKECENCDC 494
RP +F G++ G + E D+++ + + E+CDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 342 GAYGQLFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 443
G YG +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 438 ELVDDVLDVVRKECENCDCLQGFH*LIP 521
++ ++LDV+RK+ N DC G IP
Sbjct: 70 DVYPEMLDVLRKKFPNVDCRAGSAMAIP 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,941
Number of Sequences: 5004
Number of extensions: 34182
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -