Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30672
(620 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 161 4e-40
SB_17881| Best HMM Match : Tubulin (HMM E-Value=0) 161 5e-40
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 158 4e-39
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 157 9e-39
SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27) 140 1e-33
SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 2e-24
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 98 6e-21
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 98 6e-21
SB_34400| Best HMM Match : Tubulin (HMM E-Value=0) 97 1e-20
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 96 2e-20
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 95 3e-20
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 95 4e-20
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 1e-19
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0) 72 4e-13
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 67 1e-11
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 66 2e-11
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) 63 2e-10
SB_35594| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 5e-10
SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24) 55 5e-08
SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44) 53 2e-07
SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18) 42 4e-04
SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32) 36 0.035
SB_46006| Best HMM Match : MAAL_N (HMM E-Value=3.7) 34 0.081
SB_49695| Best HMM Match : Homeobox (HMM E-Value=0.068) 29 4.0
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0) 28 7.0
SB_53927| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.8) 27 9.3
SB_39519| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.4) 27 9.3
SB_22229| Best HMM Match : Arm (HMM E-Value=0) 27 9.3
SB_48238| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 161 bits (391), Expect = 4e-40
Identities = 73/93 (78%), Positives = 81/93 (87%)
Frame = +3
Query: 228 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNN 407
DL L + + +GGKYVPRAIL+DLEPGTMD+VRSG +GQ+FRPDNFVFGQSGAGNN
Sbjct: 41 DLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 100
Query: 408 WAKGHYTEGAELVDDVLDVVRKECENCDCLQGF 506
WAKGHYTEGAELVD VLDVVRKE E+CDCLQGF
Sbjct: 101 WAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 133
Score = 109 bits (261), Expect = 2e-24
Identities = 47/55 (85%), Positives = 51/55 (92%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEAS 255
MREIVH QAGQCGNQIGAKFWE+IS+EHGIDPTG Y G SDLQLERI+VYYNEA+
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEAT 55
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +2
Query: 566 KIREEYPDRIMNTYSVVP 619
KIREEYPDRIMNT+SVVP
Sbjct: 154 KIREEYPDRIMNTFSVVP 171
>SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 458
Score = 161 bits (390), Expect = 5e-40
Identities = 72/93 (77%), Positives = 81/93 (87%)
Frame = +3
Query: 228 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNN 407
DL L + + +GGKYVPRA+L+DLEPGTMD+VRSG +GQ+FRPDNFVFGQSGAGNN
Sbjct: 254 DLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 313
Query: 408 WAKGHYTEGAELVDDVLDVVRKECENCDCLQGF 506
WAKGHYTEGAELVD VLDVVRKE E+CDCLQGF
Sbjct: 314 WAKGHYTEGAELVDSVLDVVRKEAESCDCLQGF 346
Score = 109 bits (261), Expect = 2e-24
Identities = 47/55 (85%), Positives = 51/55 (92%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEAS 255
MREIVH QAGQCGNQIGAKFWE+IS+EHGIDPTG Y G SDLQLERI+VYYNEA+
Sbjct: 214 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEAT 268
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +2
Query: 566 KIREEYPDRIMNTYSVVP 619
KIREEYPDRIMNT+SVVP
Sbjct: 367 KIREEYPDRIMNTFSVVP 384
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 158 bits (383), Expect = 4e-39
Identities = 69/93 (74%), Positives = 81/93 (87%)
Frame = +3
Query: 228 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNN 407
DL L + + +GGKYVPR++L+DLEPGTMD+VRSG +GQ+FRPDNFVFGQSGAGNN
Sbjct: 41 DLQLERINVYYNEATGGKYVPRSVLIDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN 100
Query: 408 WAKGHYTEGAELVDDVLDVVRKECENCDCLQGF 506
WAKGHYTEGAEL+D VLDVVRKE E+CDC+QGF
Sbjct: 101 WAKGHYTEGAELMDSVLDVVRKEAESCDCIQGF 133
Score = 107 bits (257), Expect = 7e-24
Identities = 47/55 (85%), Positives = 51/55 (92%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEAS 255
MREIV LQAGQCGNQIGAKFWE+IS+EHGIDPTG Y G SDLQLERI+VYYNEA+
Sbjct: 1 MREIVSLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEAT 55
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +2
Query: 566 KIREEYPDRIMNTYSVVP 619
KIREEYPDRIMNT+S+VP
Sbjct: 154 KIREEYPDRIMNTFSIVP 171
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 157 bits (380), Expect = 9e-39
Identities = 67/77 (87%), Positives = 74/77 (96%)
Frame = +3
Query: 276 GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDDV 455
GKYVPRA+L+DLEPGTMD+VRSG +GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELVD V
Sbjct: 2 GKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSV 61
Query: 456 LDVVRKECENCDCLQGF 506
LDVVRKE E+CDC+QGF
Sbjct: 62 LDVVRKEAESCDCIQGF 78
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +2
Query: 566 KIREEYPDRIMNTYSVVP 619
KIREEYPDRIMNT+SVVP
Sbjct: 99 KIREEYPDRIMNTFSVVP 116
>SB_48074| Best HMM Match : Tubulin (HMM E-Value=4.4e-27)
Length = 144
Score = 140 bits (338), Expect = 1e-33
Identities = 58/78 (74%), Positives = 69/78 (88%)
Frame = +3
Query: 270 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 449
+GG+YVPR+IL+DLEPGTMDAVR G G +FRPDNFV QSGA NNWAKGHY+EGAEL+D
Sbjct: 11 TGGRYVPRSILVDLEPGTMDAVRGGPLGNMFRPDNFVNSQSGAANNWAKGHYSEGAELID 70
Query: 450 DVLDVVRKECENCDCLQG 503
++ DV+RKE ENCDC+QG
Sbjct: 71 NIFDVLRKEAENCDCMQG 88
Score = 35.5 bits (78), Expect = 0.035
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +2
Query: 566 KIREEYPDRIMNTYSVVP 619
KIREEYPDRI++ +SVVP
Sbjct: 110 KIREEYPDRILSAFSVVP 127
>SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 109 bits (261), Expect = 2e-24
Identities = 47/55 (85%), Positives = 51/55 (92%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEAS 255
MREIVH QAGQCGNQIGAKFWE+IS+EHGIDPTG Y G SDLQLERI+VYYNEA+
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEAT 55
Score = 76.6 bits (180), Expect = 2e-14
Identities = 35/52 (67%), Positives = 42/52 (80%)
Frame = +3
Query: 228 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVF 383
DL L + + +GGKYVPRAIL+DLEPGTMD+VRSG +GQ+FRPDNFVF
Sbjct: 41 DLQLERINVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVF 92
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 97.9 bits (233), Expect = 6e-21
Identities = 45/82 (54%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ V G+ A NN+A+GHYT G E
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLVTGKEDAANNYARGHYTVGKE 113
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
+VD VLD +RK + C LQGF
Sbjct: 114 IVDLVLDRIRKLADQCTGLQGF 135
Score = 97.5 bits (232), Expect = 8e-21
Identities = 44/82 (53%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 487 SETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKE 546
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
+VD VLD +RK + C LQGF
Sbjct: 547 IVDLVLDRIRKLADQCTGLQGF 568
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 192
MRE + + GQ G QIG WE+ EHGI P G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDG 34
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1
Query: 94 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 192
RE + + GQ G QIG WE+ EHGI P G
Sbjct: 435 RECISIHVGQAGVQIGNACWELYCLEHGIQPDG 467
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 97.9 bits (233), Expect = 6e-21
Identities = 44/82 (53%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 639 SETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKE 698
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
L+D VLD +RK + C LQGF
Sbjct: 699 LIDLVLDRIRKLADQCTGLQGF 720
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/82 (53%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 118 SETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE 177
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
+VD VLD +RK + C LQGF
Sbjct: 178 IVDLVLDRIRKLADQCTGLQGF 199
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +1
Query: 88 TMREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 192
T+RE + + GQ G QIG WE+ EHGI P G
Sbjct: 585 TVRECISIHVGQAGVQIGNACWELYCLEHGIQPDG 619
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 82 VVTMREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 192
++ RE + + GQ G QIG WE+ EHGI P G
Sbjct: 62 LILQRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 98
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1
Query: 94 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 192
RE + + GQ G QIG WE+ EHGI P G
Sbjct: 514 RECISIHVGQAGVQIGNACWELYCLEHGIQPDG 546
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAV 335
+E+G GK+VPRA+ +DLEP + +
Sbjct: 566 SETGAGKHVPRAVFVDLEPTVRECI 590
>SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 380
Score = 97.1 bits (231), Expect = 1e-20
Identities = 43/82 (52%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 53 SETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKE 112
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
++D VLD +RK + C LQGF
Sbjct: 113 IIDLVLDRIRKLADQCTGLQGF 134
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1
Query: 94 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 192
RE + + GQ G QIG WE+ EHGI P G
Sbjct: 1 RECISIHVGQAGVQIGNACWELYCLEHGIQPDG 33
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 96.7 bits (230), Expect = 1e-20
Identities = 43/82 (52%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPRA+ DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGSGKHVPRAVFCDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKE 113
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
++D VLD +RK + C LQGF
Sbjct: 114 MIDTVLDRLRKLADGCTGLQGF 135
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 192
MRE + + GQ G Q+G WE+ EHGI P G
Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDG 34
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 96.7 bits (230), Expect = 1e-20
Identities = 41/82 (50%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPRA+ +DLEP +D +R+G Y QLF P+ + G+ A NN+A+GHYT G +
Sbjct: 472 SETGAGKHVPRAVFVDLEPSVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKD 531
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
+D+VLD +RK + C LQGF
Sbjct: 532 HIDNVLDRIRKLADQCSGLQGF 553
Score = 93.9 bits (223), Expect = 9e-20
Identities = 42/82 (51%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPRA+ DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G +
Sbjct: 39 SETGAGKHVPRAVFCDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKQ 98
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
L++ VLD +RK + C LQGF
Sbjct: 99 LIEIVLDRLRKLADQCTGLQGF 120
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1
Query: 94 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 192
RE V + GQ G Q+G WE+ EHGI P G
Sbjct: 420 RECVSIHVGQAGVQMGNACWELYCLEHGIQPDG 452
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 96.3 bits (229), Expect = 2e-20
Identities = 44/82 (53%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
AE+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 425 AETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKE 484
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
+D VLD +RK + C LQGF
Sbjct: 485 QIDIVLDRLRKLADGCTGLQGF 506
Score = 96.3 bits (229), Expect = 2e-20
Identities = 43/82 (52%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPRA+ DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 858 SETGAGKHVPRAVFADLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKE 917
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
++D VLD +RK + C LQGF
Sbjct: 918 MIDLVLDRIRKLADQCTGLQGF 939
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1
Query: 94 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 192
RE + + GQ G QIG WE+ EHGI P G
Sbjct: 373 RECISIHVGQAGVQIGNACWELYCLEHGIQPDG 405
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 94 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 192
RE + + GQ G Q+G WE+ EHGI P G
Sbjct: 806 RECISVHVGQAGVQMGNACWELYCLEHGIQPDG 838
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 95.5 bits (227), Expect = 3e-20
Identities = 41/86 (47%), Positives = 58/86 (67%)
Frame = +3
Query: 249 GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYT 428
G + + GKYVPRA+L+DLEP +D VR+G Y L+ P+ + G+ A NN+A+GHYT
Sbjct: 961 GSKTSEAAAGKYVPRAVLVDLEPTVIDEVRTGMYRYLYHPEQMISGKEDAANNYARGHYT 1020
Query: 429 EGAELVDDVLDVVRKECENCDCLQGF 506
G E+V+ V+D +RK + C LQGF
Sbjct: 1021 IGKEMVEVVMDKIRKMTDQCSGLQGF 1046
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 95.1 bits (226), Expect = 4e-20
Identities = 43/82 (52%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE 113
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
++D VLD RK + C LQGF
Sbjct: 114 IIDLVLDRCRKLADQCTGLQGF 135
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 192
MRE + + GQ G Q+G WE+ EHGI P G
Sbjct: 1 MRECISIHVGQAGVQMGNACWELYCLEHGIQPDG 34
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 93.5 bits (222), Expect = 1e-19
Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
AE+G GK+VPRA+ +DLEP +D +R+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 19 AETGAGKHVPRAVFVDLEPTVIDEIRTGTYRQLFHPEQLLSGKEDAANNYARGHYTVGKE 78
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
+D LD +RK + C LQGF
Sbjct: 79 HIDLALDRIRKLADQCTGLQGF 100
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 73.7 bits (173), Expect = 1e-13
Identities = 32/60 (53%), Positives = 41/60 (68%)
Frame = +3
Query: 327 DAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDDVLDVVRKECENCDCLQGF 506
D VR+G Y QLF P+ + G+ A NN+A+GHYT G EL+D VLD +RK + C LQGF
Sbjct: 13 DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQCTGLQGF 72
>SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 377
Score = 71.7 bits (168), Expect = 4e-13
Identities = 31/58 (53%), Positives = 40/58 (68%)
Frame = +3
Query: 333 VRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDDVLDVVRKECENCDCLQGF 506
VR+G Y QLF P+ + G+ A NN+A+GHYT G EL+D VLD +RK + C LQGF
Sbjct: 3 VRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQCTGLQGF 60
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPRA+ +DLEP T+ A+ P+ + G+ A NN+A+GHYT G +
Sbjct: 54 SETGAGKHVPRAVFVDLEP-TVVALS---------PEQLITGKEDAANNYARGHYTIGKQ 103
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
VD VLD +RK + C LQGF
Sbjct: 104 QVDQVLDRLRKLADQCSGLQGF 125
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 192
MRE + + GQ G QIG WE+ EHGI P G
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDG 34
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/58 (48%), Positives = 38/58 (65%)
Frame = +3
Query: 333 VRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDDVLDVVRKECENCDCLQGF 506
+R+G Y QLF P+ + G+ A NN+A+GHYT G E +D LD +RK + C LQGF
Sbjct: 3 IRTGTYRQLFHPEQLLSGKEDAANNYARGHYTVGKEHIDLALDRIRKLADQCTGLQGF 60
>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 629
Score = 63.3 bits (147), Expect = 2e-10
Identities = 26/40 (65%), Positives = 31/40 (77%)
Frame = +3
Query: 387 QSGAGNNWAKGHYTEGAELVDDVLDVVRKECENCDCLQGF 506
Q+ A NNWAKG YTEGAEL+D +D +RK ENCD +QGF
Sbjct: 2 QNSAANNWAKGFYTEGAELMDSGMDCIRKLAENCDTVQGF 41
Score = 31.5 bits (68), Expect = 0.57
Identities = 11/18 (61%), Positives = 17/18 (94%)
Frame = +2
Query: 566 KIREEYPDRIMNTYSVVP 619
KIREEYPDR+++++ V+P
Sbjct: 62 KIREEYPDRLVSSFCVLP 79
>SB_35594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 61.7 bits (143), Expect = 5e-10
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = +3
Query: 333 VRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDDVLDVVRK 473
VR+G Y QLF P+ + G+ A NN+A+GHYT G EL+D VLD +RK
Sbjct: 3 VRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRK 49
>SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24)
Length = 149
Score = 54.8 bits (126), Expect = 5e-08
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = +3
Query: 333 VRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDDVLDVVRK 473
VR G Y LF PD + G+ A NN+A+GHYT G E +D L+ +RK
Sbjct: 3 VRMGTYRDLFHPDQLITGKEDAANNYARGHYTVGKEHIDLTLEKIRK 49
>SB_47142| Best HMM Match : Tubulin (HMM E-Value=5.32493e-44)
Length = 474
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +3
Query: 291 RAILLDLEPGTMDAVRSGAY--GQLFRPDNFVFGQS-GAGNNWAKGHYTEGAELVDDVLD 461
RA+ +D+E + S A G P F Q G+GNNWA G G + +D VLD
Sbjct: 67 RAVSIDMESKVISQTLSEASKSGTWRYPKGQQFSQKRGSGNNWAHGFSEHGPKSIDKVLD 126
Query: 462 VVRKECENCDCLQGF 506
+V++E E CD L GF
Sbjct: 127 LVQREVEKCDRLDGF 141
Score = 34.3 bits (75), Expect = 0.081
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1
Query: 100 IVHLQAGQCGNQIGAKFWEIISEE 171
IV LQ GQCGNQIG + +++I E+
Sbjct: 3 IVTLQLGQCGNQIGRELFDLIVED 26
>SB_2586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/35 (51%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Frame = +1
Query: 148 FWEIISEEHGIDPTGVYRGT-SDLQLERISVYYNE 249
FWE+I+EEHGIDP G S +Q +R++VY++E
Sbjct: 1 FWEVIAEEHGIDPDGQCTAVQSKIQTDRLNVYFDE 35
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +1
Query: 82 VVTMREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 192
+ TMRE + + GQ G QIG WE+ EHGI P G
Sbjct: 193 IQTMRECLSIHVGQAGVQIGNACWELYCLEHGIQPDG 229
>SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18)
Length = 553
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +3
Query: 291 RAILLDLEPGTMDAVR--SGAYGQLFRPDNFVFGQSGAGNNWAKGHYTE-----GAELVD 449
R + +D E + + R G +GQ R N + G+ G GNN+A G++ G L+
Sbjct: 40 RCVCVDSESKVIASNRRSDGVHGQN-RDSNIIAGRRGRGNNFALGYHGNSIDEGGTSLLH 98
Query: 450 DVLDVVRKECENCDCLQG 503
+D +RKE E CD G
Sbjct: 99 MTMDAMRKEVERCDSFAG 116
>SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 192
MRE + + GQ G QIG WE+ EHGI P G
Sbjct: 1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 34
Score = 31.1 bits (67), Expect = 0.75
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 273 GGKYVPRAILLDLEPGTMDAVR 338
GGK+VPRA+ +DLEP + ++
Sbjct: 58 GGKHVPRAVFVDLEPSVVGRMK 79
>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
Length = 488
Score = 35.5 bits (78), Expect = 0.035
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 291 RAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNW 410
RA+L+D+E G ++ + G +F + SG GNNW
Sbjct: 76 RAVLIDMEEGVVNNILKGPLHDVFDCQQLITDVSGCGNNW 115
>SB_46006| Best HMM Match : MAAL_N (HMM E-Value=3.7)
Length = 260
Score = 34.3 bits (75), Expect = 0.081
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +1
Query: 484 TAIASRVSTDSFPRRRHRFRNGHP--PHLKDPR--RVPRQNHEHI 606
T +A+ ++TD+ P H GHP H+ DPR R R+ H H+
Sbjct: 205 TLVANAINTDTKPVGAHNMAAGHPRVQHVTDPRIDREVRRRHSHL 249
>SB_49695| Best HMM Match : Homeobox (HMM E-Value=0.068)
Length = 919
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 429 EGAELVDDVLDVVRKECENCDC 494
EGA+ DD+LDV+ K ENC C
Sbjct: 275 EGAKAFDDLLDVL-KTIENCAC 295
>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 375
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 569 IREEYPDRIMNTYSVVP 619
++EEYPDRI+++ SV P
Sbjct: 36 LQEEYPDRILSSVSVFP 52
>SB_53927| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.8)
Length = 582
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 88 TMREIVHLQAGQCGNQIGAKFWEI 159
T+RE++ LQ G N +G +W I
Sbjct: 26 TVREVITLQFGHYANFVGTHWWNI 49
>SB_39519| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.4)
Length = 582
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 88 TMREIVHLQAGQCGNQIGAKFWEI 159
T+RE++ LQ G N +G +W I
Sbjct: 26 TVREVITLQFGHYANFVGTHWWNI 49
>SB_22229| Best HMM Match : Arm (HMM E-Value=0)
Length = 1050
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = -1
Query: 515 ESVETLEAIAVLTLLADYIKDVVDELSALRVVSLGPVVAGAGLTEDEVVRPEELP 351
+++ETL+ V++LL + D+V + ++LG + + VV+ + LP
Sbjct: 30 QNIETLQNAGVMSLLRPLLLDIVPTIQQTAALALGRLANYNDDLAEAVVKADILP 84
>SB_48238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 366 PDNFVFGQSGAGNNWAKGHYTEGAELVDDVLDVVR 470
P+ ++ +S G NW +G VDD+LD R
Sbjct: 111 PERLLYRESVRGANWVHDRGDDGGGGVDDLLDEER 145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,067,234
Number of Sequences: 59808
Number of extensions: 280437
Number of successful extensions: 891
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -