Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30672
(620 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 163 8e-41
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 163 1e-40
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 161 3e-40
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 160 6e-40
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 159 1e-39
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 159 1e-39
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 158 2e-39
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 157 7e-39
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 157 7e-39
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 98 5e-21
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 98 5e-21
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 97 8e-21
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 97 8e-21
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 97 8e-21
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 97 8e-21
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 97 1e-20
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 71 8e-13
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 70 1e-12
At5g35980.1 68418.m04333 protein kinase family protein contains ... 31 0.62
At4g37190.1 68417.m05265 expressed protein 31 0.62
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 30 1.1
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 30 1.4
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 29 1.9
At3g07470.1 68416.m00891 expressed protein contains Pfam profile... 27 7.6
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 163 bits (396), Expect = 8e-41
Identities = 72/93 (77%), Positives = 81/93 (87%)
Frame = +3
Query: 228 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNN 407
DL L + + SGG+YVPRA+L+DLEPGTMD++RSG YGQ+FRPDNFVFGQSGAGNN
Sbjct: 42 DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNN 101
Query: 408 WAKGHYTEGAELVDDVLDVVRKECENCDCLQGF 506
WAKGHYTEGAEL+D VLDVVRKE ENCDCLQGF
Sbjct: 102 WAKGHYTEGAELIDAVLDVVRKEAENCDCLQGF 134
Score = 99.1 bits (236), Expect = 2e-21
Identities = 43/56 (76%), Positives = 50/56 (89%), Gaps = 1/56 (1%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTS-DLQLERISVYYNEAS 255
MREI+H+Q GQCGNQIG+KFWE+I +EHG+DPTG Y G S DLQLERI+VYYNEAS
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEAS 56
Score = 33.9 bits (74), Expect = 0.087
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 566 KIREEYPDRIMNTYSVVP 619
KIREEYPDR+M T+SV P
Sbjct: 155 KIREEYPDRMMLTFSVFP 172
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 163 bits (395), Expect = 1e-40
Identities = 72/93 (77%), Positives = 81/93 (87%)
Frame = +3
Query: 228 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNN 407
DL L + + SGGKYVPRA+L+DLEPGTMD++RSG +GQ+FRPDNFVFGQSGAGNN
Sbjct: 41 DLQLERINVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNN 100
Query: 408 WAKGHYTEGAELVDDVLDVVRKECENCDCLQGF 506
WAKGHYTEGAEL+D VLDVVRKE ENCDCLQGF
Sbjct: 101 WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGF 133
Score = 93.5 bits (222), Expect = 1e-19
Identities = 41/55 (74%), Positives = 47/55 (85%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEAS 255
MREI+H+Q GQCGNQIGAKFWE+I EHGID TG G +DLQLERI+VY+NEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEAS 55
Score = 34.3 bits (75), Expect = 0.066
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 566 KIREEYPDRIMNTYSVVP 619
KIREEYPDR+M T+SV P
Sbjct: 154 KIREEYPDRMMMTFSVFP 171
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 161 bits (392), Expect = 3e-40
Identities = 71/93 (76%), Positives = 81/93 (87%)
Frame = +3
Query: 228 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNN 407
DL L + + SGG+YVPRA+L+DLEPGTMD++RSG +GQ+FRPDNFVFGQSGAGNN
Sbjct: 42 DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNN 101
Query: 408 WAKGHYTEGAELVDDVLDVVRKECENCDCLQGF 506
WAKGHYTEGAEL+D VLDVVRKE ENCDCLQGF
Sbjct: 102 WAKGHYTEGAELIDAVLDVVRKEAENCDCLQGF 134
Score = 97.5 bits (232), Expect = 6e-21
Identities = 43/56 (76%), Positives = 50/56 (89%), Gaps = 1/56 (1%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRG-TSDLQLERISVYYNEAS 255
MREI+H+Q GQCGNQIG+KFWE+I +EHGID TG Y G T+DLQLERI+VYYNEAS
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEAS 56
Score = 33.9 bits (74), Expect = 0.087
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 566 KIREEYPDRIMNTYSVVP 619
KIREEYPDR+M T+SV P
Sbjct: 155 KIREEYPDRMMLTFSVFP 172
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 160 bits (389), Expect = 6e-40
Identities = 69/79 (87%), Positives = 75/79 (94%)
Frame = +3
Query: 270 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 449
S G+YVPRA+L+DLEPGTMD+VRSG YGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 55 SCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID 114
Query: 450 DVLDVVRKECENCDCLQGF 506
VLDVVRKE ENCDCLQGF
Sbjct: 115 SVLDVVRKEAENCDCLQGF 133
Score = 97.1 bits (231), Expect = 8e-21
Identities = 41/58 (70%), Positives = 50/58 (86%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASLRR 264
MREI+H+Q GQCGNQIG+KFWE+++ EHGID TG Y G S+LQLER++VYYNEAS R
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGR 58
Score = 34.3 bits (75), Expect = 0.066
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 566 KIREEYPDRIMNTYSVVP 619
KIREEYPDR+M T+SV P
Sbjct: 154 KIREEYPDRMMMTFSVFP 171
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 159 bits (386), Expect = 1e-39
Identities = 71/93 (76%), Positives = 80/93 (86%)
Frame = +3
Query: 228 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNN 407
DL L + + S G++VPRA+L+DLEPGTMD+VRSG YGQ+FRPDNFVFGQSGAGNN
Sbjct: 41 DLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNN 100
Query: 408 WAKGHYTEGAELVDDVLDVVRKECENCDCLQGF 506
WAKGHYTEGAEL+D VLDVVRKE ENCDCLQGF
Sbjct: 101 WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGF 133
Score = 100 bits (239), Expect = 9e-22
Identities = 42/58 (72%), Positives = 50/58 (86%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASLRR 264
MREI+H+Q GQCGNQIGAKFWE++ EHGID TG Y+G +DLQLER++VYYNEAS R
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGR 58
Score = 33.9 bits (74), Expect = 0.087
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 566 KIREEYPDRIMNTYSVVP 619
KIREEYPDR+M T+SV P
Sbjct: 154 KIREEYPDRMMLTFSVFP 171
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 159 bits (386), Expect = 1e-39
Identities = 72/93 (77%), Positives = 80/93 (86%)
Frame = +3
Query: 228 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNN 407
DL L + + S G+YVPRAIL+DLEPGTMD+VR+G YGQ+FRPDNFVFGQSGAGNN
Sbjct: 41 DLQLERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNN 100
Query: 408 WAKGHYTEGAELVDDVLDVVRKECENCDCLQGF 506
WAKGHYTEGAEL+D VLDVVRKE ENCDCLQGF
Sbjct: 101 WAKGHYTEGAELIDAVLDVVRKEAENCDCLQGF 133
Score = 103 bits (247), Expect = 1e-22
Identities = 43/58 (74%), Positives = 51/58 (87%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASLRR 264
MREI+H+Q GQCGNQIG+KFWE++ +EHGIDPTG Y G SDLQLER++VYYNEAS R
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGR 58
Score = 33.9 bits (74), Expect = 0.087
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 566 KIREEYPDRIMNTYSVVP 619
KIREEYPDR+M T+SV P
Sbjct: 154 KIREEYPDRMMLTFSVFP 171
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 158 bits (384), Expect = 2e-39
Identities = 68/79 (86%), Positives = 75/79 (94%)
Frame = +3
Query: 270 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 449
SGGKYVPRA+L+DLEPGTMD++RSG +GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D
Sbjct: 55 SGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID 114
Query: 450 DVLDVVRKECENCDCLQGF 506
VLDVVRKE EN DCLQGF
Sbjct: 115 SVLDVVRKEAENSDCLQGF 133
Score = 96.3 bits (229), Expect = 1e-20
Identities = 42/55 (76%), Positives = 47/55 (85%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEAS 255
MREI+H+Q GQCGNQIGAKFWE+I +EHGID TG Y G S LQLERI VY+NEAS
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEAS 55
Score = 34.3 bits (75), Expect = 0.066
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 566 KIREEYPDRIMNTYSVVP 619
KIREEYPDR+M T+SV P
Sbjct: 154 KIREEYPDRMMMTFSVFP 171
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 157 bits (380), Expect = 7e-39
Identities = 70/93 (75%), Positives = 79/93 (84%)
Frame = +3
Query: 228 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNN 407
DL L + + S G++VPRA+L+DLEPGTMD++RSG YGQ FRPDNFVFGQSGAGNN
Sbjct: 41 DLQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNN 100
Query: 408 WAKGHYTEGAELVDDVLDVVRKECENCDCLQGF 506
WAKGHYTEGAEL+D VLDVVRKE ENCDCLQGF
Sbjct: 101 WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGF 133
Score = 104 bits (249), Expect = 5e-23
Identities = 45/58 (77%), Positives = 50/58 (86%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASLRR 264
MREI+H+Q GQCGNQIGAKFWE++ EHGIDPTG Y G SDLQLERI+VYYNEAS R
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGR 58
Score = 33.9 bits (74), Expect = 0.087
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 566 KIREEYPDRIMNTYSVVP 619
KIREEYPDR+M T+SV P
Sbjct: 154 KIREEYPDRMMLTFSVFP 171
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 157 bits (380), Expect = 7e-39
Identities = 70/93 (75%), Positives = 79/93 (84%)
Frame = +3
Query: 228 DLCLLQ*GLVATAESGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNN 407
DL L + + S G++VPRA+L+DLEPGTMD++RSG YGQ FRPDNFVFGQSGAGNN
Sbjct: 41 DLQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNN 100
Query: 408 WAKGHYTEGAELVDDVLDVVRKECENCDCLQGF 506
WAKGHYTEGAEL+D VLDVVRKE ENCDCLQGF
Sbjct: 101 WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGF 133
Score = 104 bits (249), Expect = 5e-23
Identities = 45/58 (77%), Positives = 50/58 (86%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEASLRR 264
MREI+H+Q GQCGNQIGAKFWE++ EHGIDPTG Y G SDLQLERI+VYYNEAS R
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGR 58
Score = 33.9 bits (74), Expect = 0.087
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 566 KIREEYPDRIMNTYSVVP 619
KIREEYPDR+M T+SV P
Sbjct: 154 KIREEYPDRMMLTFSVFP 171
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 97.9 bits (233), Expect = 5e-21
Identities = 45/82 (54%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKE 113
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
+VD LD VRK +NC LQGF
Sbjct: 114 IVDLCLDRVRKLADNCTGLQGF 135
Score = 42.3 bits (95), Expect = 2e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGV 195
MREI+ + GQ G Q+G WE+ EHGI P G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGM 35
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 97.9 bits (233), Expect = 5e-21
Identities = 45/82 (54%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKE 113
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
+VD LD VRK +NC LQGF
Sbjct: 114 IVDLCLDRVRKLADNCTGLQGF 135
Score = 42.3 bits (95), Expect = 2e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGV 195
MREI+ + GQ G Q+G WE+ EHGI P G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGM 35
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 97.1 bits (231), Expect = 8e-21
Identities = 44/82 (53%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKE 113
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
+VD LD +RK +NC LQGF
Sbjct: 114 IVDLCLDRIRKLADNCTGLQGF 135
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRG 204
MRE + + GQ G Q+G WE+ EHGI P G G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPG 38
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 97.1 bits (231), Expect = 8e-21
Identities = 44/82 (53%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKE 113
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
+VD LD +RK +NC LQGF
Sbjct: 114 IVDLCLDRIRKLADNCTGLQGF 135
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRG 204
MRE + + GQ G Q+G WE+ EHGI P G G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPG 38
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 97.1 bits (231), Expect = 8e-21
Identities = 44/82 (53%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKE 113
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
+VD LD +RK +NC LQGF
Sbjct: 114 IVDLCLDRIRKLADNCTGLQGF 135
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 192
MRE + + GQ G Q+G WE+ EHGI P G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDG 34
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 97.1 bits (231), Expect = 8e-21
Identities = 44/82 (53%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +3
Query: 264 AESG-GKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAE 440
+E+G GK+VPRA+ +DLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E
Sbjct: 54 SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKE 113
Query: 441 LVDDVLDVVRKECENCDCLQGF 506
+VD LD +RK +NC LQGF
Sbjct: 114 IVDLCLDRIRKLADNCTGLQGF 135
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTG 192
MRE + + GQ G Q+G WE+ EHGI P G
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDG 34
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 96.7 bits (230), Expect = 1e-20
Identities = 42/79 (53%), Positives = 56/79 (70%)
Frame = +3
Query: 270 SGGKYVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 449
S G++VPRA+ LDLEP +D VR+G Y QLF P+ + G+ A NN+A+GHYT G E+VD
Sbjct: 57 SSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVD 116
Query: 450 DVLDVVRKECENCDCLQGF 506
L+ +RK +NC LQGF
Sbjct: 117 TCLERLRKLADNCTGLQGF 135
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQL--ERISVYYNEAS 255
MREI+ + GQ G Q+G WE+ EHGI P G S + + + +++E S
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETS 57
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 70.5 bits (165), Expect = 8e-13
Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Frame = +3
Query: 282 YVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDDV 455
Y+PRA+L+DLEP ++ +++G Y L+ +N GAGNNWA G Y +G + +++
Sbjct: 60 YIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEI 118
Query: 456 LDVVRKECENCDCLQGF 506
+D++ +E + D L+GF
Sbjct: 119 MDMIDREADGSDSLEGF 135
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +1
Query: 94 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA 252
REI+ LQ GQCGNQIG +FW+ + EHGI G+ + +R V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQA 55
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 69.7 bits (163), Expect = 1e-12
Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Frame = +3
Query: 282 YVPRAILLDLEPGTMDAVRSGAYGQLFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDDV 455
Y+PRA+L+DLEP ++ +++G Y L+ +N GAGNNWA G Y +G + +++
Sbjct: 60 YIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEI 118
Query: 456 LDVVRKECENCDCLQGF 506
+D++ +E + D L+GF
Sbjct: 119 MDMIDREADGSDSLEGF 135
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +1
Query: 94 REIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRGTSDLQLERISVYYNEA 252
REI+ LQ GQCGNQIG +FW+ + EHGI G+ + +R V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQA 55
>At5g35980.1 68418.m04333 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 956
Score = 31.1 bits (67), Expect = 0.62
Identities = 13/46 (28%), Positives = 17/46 (36%)
Frame = +1
Query: 481 RTAIASRVSTDSFPRRRHRFRNGHPPHLKDPRRVPRQNHEHILSSP 618
R + + D P H F G PH+ R+P N H P
Sbjct: 481 RVHVTQNIKVDHHPGEGHWFAAGLSPHVSGRTRIPMHNSPHFQMMP 526
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 31.1 bits (67), Expect = 0.62
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 91 MREIVHLQAGQCGNQIGAKFWEIISEEHGI 180
MREIV +Q G+ N +G+ FW E G+
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGL 30
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +3
Query: 462 VVRKECENCDCLQGF 506
VVRKE ENC+CLQ F
Sbjct: 7 VVRKEAENCNCLQVF 21
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 82 VVTMREIVHLQAGQCGNQIGAKFWEIISEEHGIDPTGVYRG 204
V+ + + QA G IG ++W IIS++ G D T YRG
Sbjct: 668 VLNLESMGRGQAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 88 TMREIVHLQAGQCGNQIGAKFWEIISE 168
T +I++ A + G+ GA FWE+ISE
Sbjct: 343 TTYDIIYASAQKGGSAAGALFWEVISE 369
>At3g07470.1 68416.m00891 expressed protein contains Pfam profile
PF04398: Protein of unknown function, DUF538
Length = 169
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 175 GIDPTGVYRGTSDLQLERISVYYNEA 252
GI P GV T D++ R SVY N+A
Sbjct: 43 GIFPKGVREFTFDVETGRFSVYLNQA 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,147,640
Number of Sequences: 28952
Number of extensions: 201495
Number of successful extensions: 702
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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