Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30670
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121... 29 2.8
06_03_0228 - 18439659-18440900,18441212-18441736,18441813-184421... 29 3.7
08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149 28 6.4
10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505 28 8.5
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 28 8.5
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515 28 8.5
05_03_0226 - 10645036-10646001,10646313-10646828,10646905-106472... 28 8.5
04_03_0101 - 11242252-11243295,11243607-11244131,11244208-112445... 28 8.5
>12_02_0507 +
19810446-19811048,19811220-19811466,19811590-19812125,
19812397-19813620
Length = 869
Score = 29.5 bits (63), Expect = 2.8
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +2
Query: 287 VAEPLENLKQSALKSGVSEDEFQAFLVYAGGLFANSGNY--KGFGDTKFI-PNLPAESLE 457
+AE L N K+ A++ G +ED + F A LFA+ N +G GD + + ++
Sbjct: 426 IAESLTNCKRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEGSGDEDISDEDSSDDEID 483
Query: 458 LIIKASKAYEKD 493
LII K E D
Sbjct: 484 LIIYILKKREMD 495
>06_03_0228 -
18439659-18440900,18441212-18441736,18441813-18442118,
18442290-18442877
Length = 886
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +2
Query: 287 VAEPLENLKQSALKSGVSEDEFQAFLVYAGGLFANSGNY--KGFGDTKFIPNLPA-ESLE 457
+AE L N ++ A++ G +ED + F A LFA+ N +G GD + + ++
Sbjct: 437 IAESLTNCQRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEGSGDEDISDEYSSDDEID 494
Query: 458 LIIKASKAYEKD 493
LII K E D
Sbjct: 495 LIIYILKKREMD 506
>08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149
Length = 916
Score = 28.3 bits (60), Expect = 6.4
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +2
Query: 287 VAEPLENLKQSALKSGVSEDEFQAFLVYAGGLFANSGNY--KGFGDTKFI-PNLPAESLE 457
+AE L N ++ A++ G +ED + F A LFA++ N +G GD + + ++
Sbjct: 467 IAESLTNCQRLAVECGAAEDSVEYFC--ATQLFASNHNRDGEGSGDEDISDEDSSDDEID 524
Query: 458 LIIKASKAYEKD 493
LII K E D
Sbjct: 525 LIIYILKKREMD 536
>10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505
Length = 916
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +2
Query: 287 VAEPLENLKQSALKSGVSEDEFQAFLVYAGGLFANSGNY--KGFGDTKFI-PNLPAESLE 457
+AE L N ++ A++ G +ED + F A LFA+ N +G GD + + ++
Sbjct: 467 IAESLTNCQRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEGSGDEDISDEDSSDDEID 524
Query: 458 LIIKASKAYEKD 493
LII K E D
Sbjct: 525 LIIYILKKREMD 536
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +3
Query: 132 ELDSSQAFDNLTTNEKLYAHYLSQAAWNGGLIVLV-----QTSPESQRYSPCCIESLWLS 296
+LDS Q F N T ++ Y+ + G + + PE Q +S SLWLS
Sbjct: 414 KLDSFQRFGNATGQDRRITPYMDHEEYLHGKHEVEPRIDREMLPEGQPFSSSRGSSLWLS 473
Query: 297 H 299
H
Sbjct: 474 H 474
>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
Length = 916
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +2
Query: 287 VAEPLENLKQSALKSGVSEDEFQAFLVYAGGLFANSGNY--KGFGDTKFI-PNLPAESLE 457
+AE L N ++ A++ G +ED + F A LFA+ N +G GD + + ++
Sbjct: 467 IAESLTNCQRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEGSGDEDISDEDSSDDEID 524
Query: 458 LIIKASKAYEKD 493
LII K E D
Sbjct: 525 LIIYILKKREMD 536
>05_03_0226 -
10645036-10646001,10646313-10646828,10646905-10647210,
10647382-10647984
Length = 796
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +2
Query: 287 VAEPLENLKQSALKSGVSEDEFQAFLVYAGGLFANSGNY--KGFGDTKFI-PNLPAESLE 457
+AE L N ++ A++ G +ED + F A LFA+ N +G GD + + ++
Sbjct: 439 IAESLTNCQRLAVECGAAEDSVEYFC--ATQLFASKHNRDGEGSGDEDISDEDSSDDEID 496
Query: 458 LIIKASKAYEKD 493
LII K E D
Sbjct: 497 LIIYILKKREMD 508
>04_03_0101 -
11242252-11243295,11243607-11244131,11244208-11244513,
11244692-11245231
Length = 804
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +2
Query: 287 VAEPLENLKQSALKSGVSEDEFQAFLVYAGGLFANSGNY--KGFGDTKFI-PNLPAESLE 457
+AE L N ++ A++ G +ED + F A LFA+ N +G GD + + ++
Sbjct: 421 IAESLTNCQRLAVECGATEDSVEYFC--ATQLFASKHNRDGEGSGDEDISDEDSSDDEID 478
Query: 458 LIIKASKAYEKD 493
LII K E D
Sbjct: 479 LIIYILKKREMD 490
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,258,983
Number of Sequences: 37544
Number of extensions: 356926
Number of successful extensions: 699
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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