Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30670
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37620| Best HMM Match : IncA (HMM E-Value=0.39)                     29   4.9  
SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)                    28   6.5  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_23962| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_9909| Best HMM Match : AAA (HMM E-Value=0)                          28   8.6  
SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)                    28   8.6  

>SB_37620| Best HMM Match : IncA (HMM E-Value=0.39)
          Length = 307

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 17  QINQSFTLKINKILYTKNVKNHHGR 91
           Q  QS   K+N ILY KN ++H GR
Sbjct: 54  QRQQSLLEKLNIILYEKNARSHLGR 78


>SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)
          Length = 782

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 102 FLLPNN-QRFVELDSSQAFDNLTTNEKLYAHYLSQAAWNGGLIVLVQTSPESQRYSPCCI 278
           F  PN  +++VE  S  A   LT  +  Y   L +  +N   +V+   +P+ + Y+P   
Sbjct: 16  FTEPNEFEKYVEQRSWTA--QLTKGKYYYMETLMKEYYNDDSLVVAVKTPDGKFYAPIPS 73

Query: 279 ESLWLSH 299
           + LW ++
Sbjct: 74  QFLWTTY 80


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 283 DSMQQGEYLCDSGLVCTNT 227
           D  Q G+Y CD   +CTNT
Sbjct: 44  DECQAGKYSCDPNALCTNT 62


>SB_23962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 269 LLHRVFVAEPLENLKQSALKSGVSEDEFQAFLVYAGGLFANSGNYKGFGD 418
           +L+  F   P E    S L+ G+ E  + AF+ +    + N G   G+GD
Sbjct: 35  ILNEDFEVNP-EEFPGSFLRGGILEGSWFAFVSFTTVGYVNEGGLDGYGD 83


>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 550 PRLTSLGLANKGVTTYFSSNCTEEDS---NLVNDWMKLN 657
           P LT L  A+KG++ YF   C    S    +V+D+   N
Sbjct: 62  PGLTKLSWASKGISDYFIGECRNNCSKVQGIVDDYKNAN 100


>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
          Length = 400

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 614 VQLLEKYVVTPLLAKPRLVNLGASP*MAFLVF 519
           +  L + V TPLL   R VNLG  P    L+F
Sbjct: 93  IDKLREVVETPLLHPERFVNLGIEPPKGVLLF 124


>SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)
          Length = 1931

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -3

Query: 280  SMQQGEYLCDSGLVC--TNTISPP 215
            S Q G+ L D+GL+C  T+T SPP
Sbjct: 1731 SCQSGKVLLDAGLLCGATSTTSPP 1754


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,547,564
Number of Sequences: 59808
Number of extensions: 420787
Number of successful extensions: 948
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)