Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30669
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.14 
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   1.7  
SPCC1827.06c |||aspartate semialdehyde dehydrogenase|Schizosacch...    26   5.1  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    25   6.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.0  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   9.0  

>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 421 KSSCSSAFFIDFHESFLESFRDYNLVMLNNARCWLLEYL*HPNL 290
           +SS +S  F DF   FL   RDY+L   N++ C L   +  P++
Sbjct: 231 RSSLNSKTFNDFRTLFLLLIRDYSLFHGNSSHCMLANSMLPPSI 274


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 186 LLEDVFNLSPAGRDIELEIPKFEYAVD 266
           LL D+ N SP G+ +     +FEY VD
Sbjct: 177 LLSDLVNQSPIGQGVVASQNQFEYGVD 203


>SPCC1827.06c |||aspartate semialdehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 391 DFHESFLESFRDYNLVMLNNAR 326
           DF     +SFRD NLV+++NA+
Sbjct: 87  DFAGEIEKSFRDANLVIVSNAK 108


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 177 EKGLLEDVFNLSPAGRDIELEIPKFEYAVDW 269
           +K  +ED+  +S     +E+E+P FE + DW
Sbjct: 323 DKSWMEDI--ISRVESSLEMELPGFEGSDDW 351


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -2

Query: 438 TAISPVKAPAVAPSSSTFTKASWKALETTTWSCLT---MPGAGSWNIFDTP 295
           T+ S    P + P+S++ T  +   L TT+ SC T   +P  G  +   TP
Sbjct: 141 TSTSSTSIP-IPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTP 190



 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -2

Query: 438 TAISPVKAPAVAPSSSTFTKASWKALETTTWSCLT---MPGAGSWNIFDTPTL 289
           T+ S    P + P+S++ T  +   L TT+ SC T   +P  G+     TPT+
Sbjct: 254 TSTSSTSIP-IPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTV 305


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 456 PDRHHLYRSK*TIHSCSYSSRRQDTL 533
           P    + RS  TIHSC+ S R +D+L
Sbjct: 365 PPSSSISRSS-TIHSCTSSKRNEDSL 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,614
Number of Sequences: 5004
Number of extensions: 50231
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)