Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30669
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 41 0.001
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 38 0.007
11_02_0012 - 7346282-7347136,7347234-7347593 38 0.009
11_01_0767 + 6438648-6438809,6439146-6440000 36 0.020
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 36 0.026
11_02_0011 - 7337618-7338496,7338596-7338991 35 0.061
05_06_0044 - 25150322-25151260 31 0.75
03_02_0930 - 12480983-12481888 31 0.75
09_03_0056 - 11936264-11939677 29 2.3
12_01_0410 - 3234836-3234958,3235636-3235776,3235899-3235949,323... 29 3.0
11_01_0750 - 6315126-6315896,6316371-6316784 29 3.0
12_01_0917 + 9010666-9011022 29 4.0
03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555 29 4.0
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 28 5.3
06_01_1180 + 10141850-10141959,10142096-10142621 28 5.3
12_01_0786 - 7181513-7181635,7181898-7182047,7184699-7184778,718... 28 7.0
06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,344... 28 7.0
01_05_0618 + 23723441-23723465,23724733-23724788,23725108-237253... 28 7.0
01_01_0083 + 631196-631675 28 7.0
11_01_0771 + 6453130-6454488 27 9.2
08_02_1492 + 27504158-27506098 27 9.2
03_05_0034 + 20064750-20065001,20065542-20065730,20066313-200665... 27 9.2
02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419... 27 9.2
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 27 9.2
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 344 DQVVVSKAFQEAFVKVDEEGATAGAFTGLI-AVPTXXXXXXXXXXXFKVDHPFLFL 508
+++VVS + E+FV+V+EEG A A T ++ + F DHPF+FL
Sbjct: 334 EKIVVSAVYHESFVEVNEEGTEAAAATAVVMTLGCAAPSAPVHVVDFVADHPFMFL 389
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 37.9 bits (84), Expect = 0.007
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = +2
Query: 251 RIRSGLDLNTILPKVGVSKIFQEPAP-----GIVKHDQVVVSKAFQEAFVKVDEEGATAG 415
+I G + + +L +G+ F A G + + VS F ++FV+VDEEG A
Sbjct: 152 KISFGFEASDLLKILGLQLPFSSKADLTGMVGSPERHNLFVSSLFHKSFVQVDEEGTEAA 211
Query: 416 AFTGLIAVPTXXXXXXXXXXXFKVDHPFLFL 508
A + + F DHPFLFL
Sbjct: 212 AASAAVV----SFRSAPVTVDFVADHPFLFL 238
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 37.5 bits (83), Expect = 0.009
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
Frame = +2
Query: 269 DLNTILPKVGVSKIF---QEPAPGIVKHDQVVVSKAFQEAFVKVDEEGATAGAFTGLIAV 439
++N +L +G+ F + G++ + VVV K A V+V+EEG A A T
Sbjct: 302 EMNEVLKGMGIGAAFDVGKVDLSGMIDGELVVVEKVMHRAVVEVNEEGTEAAAATA--CT 359
Query: 440 PTXXXXXXXXXXXFKVDHPFLFLFFTKTRYSLLGHTHI 553
F DHPF F + ++L H+
Sbjct: 360 MKFLCLTLTSPVDFVADHPFAFFVVEEKSDAVLFAGHV 397
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Frame = +3
Query: 108 GFRMVVVLPDKIDGLPAVLEK--AAEKGLLEDVF--NLSPAGRDI---ELEIPKFE 254
G M + LPD DGLPA+++K A G F + P R I +L +P+F+
Sbjct: 241 GLSMYIFLPDARDGLPALVDKMAVASSGTASSSFLRDHRPGRRRIKVGDLRVPRFK 296
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 84 IELPYKEPGFRMVVVLPDKIDGLPAVLEKAAEKGLLEDVFNLSPAGRDI-ELEIPKFEYA 260
++L Y P F M+V LPD DGLP +L++ D +L P + +PKF+ A
Sbjct: 160 LKLRYSLPSFAMLVFLPDDRDGLPGLLDRITASPEFVDE-HLPPGCVPVGRFRVPKFKLA 218
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 35.9 bits (79), Expect = 0.026
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Frame = +2
Query: 251 RIRSGLDLNTILPKVGVSKIFQEPAPGIVKHDQ-----VVVSKAFQEAFVKVDEEGATAG 415
+I G + + +L +G+ F A D + VS F ++FV+V+EEG A
Sbjct: 360 KISFGFEASDLLKSLGLHLPFSSEADLTEMVDSPEGKNLFVSSVFHKSFVEVNEEGTEAA 419
Query: 416 AFTGLIAVPTXXXXXXXXXXXFKVDHPFLFL 508
A T + F DHPFLFL
Sbjct: 420 AATAAVIT----LRSAPIAEDFVADHPFLFL 446
Score = 33.5 bits (73), Expect = 0.14
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = +2
Query: 356 VSKAFQEAFVKVDEEGATAGAFTGLIAVPTXXXXXXXXXXXFKVDHPFLFLFFTKTRYSL 535
VS F ++F++V+EEG A A AV F DHPF+FL +
Sbjct: 652 VSSVFHKSFIEVNEEGTEATA-----AVMVSMEHSRPRRLNFVADHPFMFLIREDVTGVI 706
Query: 536 LGHTHIKN 559
L H+ N
Sbjct: 707 LFIGHVVN 714
Score = 32.7 bits (71), Expect = 0.25
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Frame = +3
Query: 9 TIKKPTMRLLQSLFYTENEELGAKMIELPYKEPG----FRMVVVLPDKIDGLPAVLEKA- 173
+++ P M + + + + L K+++LPY + G F M ++LP+ DGL ++ EK
Sbjct: 529 SVQAPFMSTRKKQYLSSYDSL--KVLKLPYLQGGDKRQFSMYILLPEAQDGLWSLAEKLN 586
Query: 174 AEKGLLEDVFNLSPAGRDIELEIPKFE 254
+E +E+ + P + ++PKF+
Sbjct: 587 SEPEFMENHIPMRPVHVG-QFKLPKFK 612
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = +3
Query: 9 TIKKPTMRLLQSLFYTENEELGAKMIELPYKEPG----FRMVVVLPDKIDGLPAVLEK 170
+++ P M + + + L K+++LPY++ G F M ++LP+ DGL ++ EK
Sbjct: 277 SVQAPFMSTSKKQYILSYDNL--KVLKLPYQQGGDKRQFSMYILLPEAQDGLWSLAEK 332
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 34.7 bits (76), Expect = 0.061
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = +2
Query: 350 VVVSKAFQEAFVKVDEEGATAGAFTGLIAVPTXXXXXXXXXXXFKVDHPFLFLFFTKTRY 529
+VV + F A V+V+EEG A A T T F DHPF F +T
Sbjct: 353 LVVEEVFHRAVVEVNEEGTEAAASTAC----TIRLLSMSYPEDFVADHPFAFFVVEETSG 408
Query: 530 SLLGHTHI 553
++L H+
Sbjct: 409 AVLFAGHV 416
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 108 GFRMVVVLPDKIDGLPAVLEKAA 176
G M + LPD+ DGLPA+++K A
Sbjct: 261 GLSMYIFLPDERDGLPALVDKMA 283
>05_06_0044 - 25150322-25151260
Length = 312
Score = 31.1 bits (67), Expect = 0.75
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +3
Query: 111 FRMVVVLPDKIDGLPAVLEKAAEKG---LLEDVFNLSPAGRDIELEIPKFEYAV 263
F M + LPD DGLP + K A L + P EL+IPKFE ++
Sbjct: 153 FAMYIYLPDDRDGLPELARKLASNPAAFLRRTIVPAQPVAVG-ELKIPKFEVSL 205
Score = 31.1 bits (67), Expect = 0.75
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = +2
Query: 356 VSKAFQEAFVKVDEEGATAGAFTGLIAVPTXXXXXXXXXXXFKVDHPFLF 505
VS + FV V+EEG A A G + F DHPFLF
Sbjct: 243 VSSLLHQCFVNVNEEGTVAAA--GTVGEIMGFAMPDDQIVDFVADHPFLF 290
>03_02_0930 - 12480983-12481888
Length = 301
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = -2
Query: 477 GRDGGGLDSEDVGTAISPVKAPAVAPSSST 388
G GGG DS + GT PV APA A SSS+
Sbjct: 180 GSSGGGHDSNNAGT---PVSAPAPASSSSS 206
>09_03_0056 - 11936264-11939677
Length = 1137
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 468 GGGLDSEDVGTAISPVKAPAVAPSSSTFTKASWKALET 355
GGG E G A++ APA A S T+ASW+ + T
Sbjct: 24 GGGGGVEGAGAAVAA--APATARRSRKRTRASWRTVTT 59
>12_01_0410 -
3234836-3234958,3235636-3235776,3235899-3235949,
3236045-3236125,3236427-3236483,3236898-3236993,
3237204-3237379,3237630-3237703,3237909-3238016,
3238100-3238236,3238396-3238446,3239032-3239142,
3239291-3239363,3240322-3240398,3240641-3240706,
3241349-3241463,3242255-3242511
Length = 597
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2
Query: 477 GRDGGGLDSEDVGTAISPVKAPAVAPSSS 391
G GGG++ E VG + SP + PA AP++S
Sbjct: 8 GGGGGGVE-EGVGESSSPPRDPAAAPAAS 35
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +3
Query: 78 KMIELPYK----EPGFRMVVVLPDKIDGLPAVLEKA-AEKGLLEDVFNLSPAGRDIELEI 242
K+I+LPYK E F M + LPD DGL + +K +E LE +L + + +
Sbjct: 227 KVIKLPYKQGKNERKFSMYIFLPDDHDGLFELTQKIFSEPMFLEQ--HLPTEKCHVGISV 284
Query: 243 PKFE 254
P F+
Sbjct: 285 PNFK 288
>12_01_0917 + 9010666-9011022
Length = 118
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 498 NGWSTLNGRDGGGLDSEDVGTA 433
NGW GR GGG+ +D G A
Sbjct: 46 NGWQRRRGRSGGGVRVDDDGNA 67
>03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555
Length = 614
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 501 CSYSSRRQDTLCWDTHTLKIAFVFDYLWIIN 593
C S RR+ + WD H + A D+ W IN
Sbjct: 576 CRLSERRKIEIAWDRHLAEEAGFSDHHWKIN 606
>09_02_0286 -
6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 308 IFQEPAPGIVKHDQVVVSKAFQEAFVKVDEEGATAGAFTG 427
+F+ PAP I ++ AF+ A V D +GA A G
Sbjct: 20 LFRAPAPAIAVGEEAAALLAFRRASVADDPDGALASWVLG 59
>06_01_1180 + 10141850-10141959,10142096-10142621
Length = 211
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = -2
Query: 483 LNGRDGGGLDSEDVGTAISPVKAPAVA--PSSSTFTKA-SWKALETTTWSCLTMPGAGSW 313
+N GGG + SP APA A PS S +K + A E + + G +W
Sbjct: 136 VNVSSGGGAAAPSPAPVTSPAPAPAQATNPSPSPDSKPDNQPAAEQPPENSASRGGMAAW 195
Query: 312 NIFD--TPTLGKIVLR 271
++ P + +VLR
Sbjct: 196 SLLSVVVPAIASLVLR 211
>12_01_0786 -
7181513-7181635,7181898-7182047,7184699-7184778,
7185710-7186098,7186499-7186628,7186793-7187183
Length = 420
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 492 WSTLNGRDGGGLDSEDVGTAISPVKAPAVAPSSSTF 385
WST G + +D E G + S APA+AP +
Sbjct: 81 WSTAFGNNCSKIDGEYGGASTSSSAAPALAPPQEDY 116
>06_01_0485 -
3444240-3444398,3444507-3444572,3444644-3444724,
3444823-3444900,3444980-3445075,3445363-3445405,
3445498-3445571,3445693-3445781,3445887-3445935,
3446171-3446227,3446309-3446425,3448633-3448698,
3449140-3449196,3449271-3449363,3449515-3449662,
3449753-3449902,3449979-3450181,3450319-3450438,
3450530-3450694,3450784-3450870,3450951-3451100,
3451225-3451365,3451399-3451569,3452015-3452091,
3452175-3452415,3452495-3452758,3452913-3453000,
3453099-3453481
Length = 1170
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 118 WSWFCPTKLTDYLQCWRKRPKRVYLK 195
WS FCP + CW +++Y K
Sbjct: 379 WSLFCPNEAPGLADCWGDEFEKLYTK 404
>01_05_0618 +
23723441-23723465,23724733-23724788,23725108-23725372,
23725623-23725759,23725849-23725943,23726033-23727057,
23727293-23727453,23727816-23727892,23727978-23728125,
23728364-23728441,23728611-23728838
Length = 764
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -2
Query: 462 GLDSEDVGTAISPVKAPAVAPSSSTFTKASWKALETTTWSCLTM-PGAGSWNIFDT 298
G + DV + ++ PAV P+SS + ++++ E T S + PG ++ DT
Sbjct: 248 GKTTTDVKEPRTSIRGPAVTPNSSPDLETTFESTEAGTSSVSSSDPGTSPYSASDT 303
>01_01_0083 + 631196-631675
Length = 159
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 205 TYPPPAETSN*RYPSSNTQWTGP 273
+YPPP+ +S+ PSS++ W P
Sbjct: 56 SYPPPSSSSSNTPPSSSSYWNYP 78
>11_01_0771 + 6453130-6454488
Length = 452
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 111 FRMVVVLPDKIDGLPAVLEKAAEK-GLLEDVFNLSPAGRDIELEIPKFEYAVDWTLILFY 287
+ M + LPD DGL ++E+ A + G L + + E +PKF+ + +++
Sbjct: 294 YAMAIFLPDARDGLRGLVERMASRPGFLHEHMPAAWPVPVGEFRVPKFKVSCGGSVVGAL 353
Query: 288 LRLG 299
+LG
Sbjct: 354 EQLG 357
>08_02_1492 + 27504158-27506098
Length = 646
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 96 YKEPGFRMVVVLPDKIDGLPAVLEKAAEKGLLEDVFNLSPAG 221
Y+ P R++ +D A+L++ GL+ VF + PAG
Sbjct: 55 YERPARRILDDTGKALDKAAALLDRCRGHGLIRRVFTIIPAG 96
>03_05_0034 +
20064750-20065001,20065542-20065730,20066313-20066511,
20069479-20069885
Length = 348
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 120 VVVLPDKIDGLPAVLEKAAEKGL-LEDVFNLSPA 218
V LPD DG+ ++ + A KGL L+D+ LS A
Sbjct: 182 VTYLPDSFDGIRRLITRFASKGLSLKDLAVLSGA 215
>02_03_0381 -
18339290-18339994,18340083-18340103,18341925-18341982,
18342084-18342220,18342480-18342650
Length = 363
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 113 PYGRGSARQN*RTTCSAGESGRKGS 187
PYGRG + N S G GR GS
Sbjct: 255 PYGRGRGQNNYNNPGSRGRGGRDGS 279
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = -2
Query: 489 STLNGRDGGGLDSEDVGTAISP---VKAPAVAPSSSTFTKASWKALETTTWSCLTMPGAG 319
+T NGR G S + P V A + SSS +K A+ + + + P +
Sbjct: 1266 NTENGRYKGRAPSNFSSPRVLPSEAVTAKKLVKSSSFNSKPGSPAISSNSAENSSNPNSL 1325
Query: 318 SWNIFDTPTLGKIVLRSSPLRIRT 247
S + TP K VL S+P+ +T
Sbjct: 1326 SASPATTPAAAKAVLSSAPIASQT 1349
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,490,872
Number of Sequences: 37544
Number of extensions: 339405
Number of successful extensions: 1040
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -