Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30669
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      50   2e-06
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      48   6e-06
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      45   6e-05
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                  30   1.3  
SB_39529| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6)                29   4.1  
SB_47273| Best HMM Match : Pkinase_C (HMM E-Value=7.3)                 29   4.1  
SB_49110| Best HMM Match : N6_Mtase (HMM E-Value=2.5e-05)              28   7.1  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
 Frame = +3

Query: 51  YTENEELGAKMIELPYKEPGFRMVVVLPDKIDGLPAVLEKAAEKGLLEDVFNLSPAGR-- 224
           Y  +++   K++ELPY +    MV+VLPD+ +GL A  E+      + D+FN   + R  
Sbjct: 170 YLHSDKYKCKLLELPYVDTQLSMVLVLPDETEGL-ARFEQDLTHDKMTDIFNSVSSQRPA 228

Query: 225 DIELEIPKFEYAVDWTLILFYLRLGCQR 308
           D+E+ IPKF+   ++ L      LG ++
Sbjct: 229 DVEVYIPKFKMTSEFKLNEALQELGMKK 256



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
 Frame = +2

Query: 251 RIRSGLDLNTILPKVGVSKIFQEPAP---GI-VKHDQVVVSKAFQEAFVKVDEEGATAGA 418
           ++ S   LN  L ++G+ K+F + A    GI +  + + VS    +AFV+V+EEG  A A
Sbjct: 238 KMTSEFKLNEALQELGMKKMFDQAAADFTGISLPPEHLFVSAVLHKAFVEVNEEGTEAAA 297

Query: 419 FTGLIAVPTXXXXXXXXXXXFKVDHPFLFL 508
            T   A+             F+ DHPFLFL
Sbjct: 298 ATA--AIMMMRCAIMREPLVFRADHPFLFL 325


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
 Frame = +3

Query: 51  YTENEELGAKMIELPYKEPGFRMVVVLPDKIDGLPAVLEKAAEKGLLEDVFN--LSPAGR 224
           Y E+  LG +++ELPY      MVV+LP+++DGL   LE +  K  L++      +    
Sbjct: 207 YLESSTLGCQIVELPYAGEKLSMVVLLPNEVDGL-GKLESSLNKETLQEAMTSLRNSHPE 265

Query: 225 DIELEIPKFEYAVDWTL 275
           ++E+ +PKF    +++L
Sbjct: 266 EVEVTLPKFTLTQEFSL 282



 Score = 35.9 bits (79), Expect = 0.027
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +2

Query: 272 LNTILPKVGVSKIFQEPAPGI--VKHDQVVVSKAFQEAFVKVDEEGATAGAFTGLIAVPT 445
           L   L  +G S +F      +  +    +VVS+   +AFV+V+EEG  A A TG+     
Sbjct: 282 LGETLKGMGASDLFSPGKADLSGISAAPLVVSEVVHKAFVEVNEEGTIAAAATGV----G 337

Query: 446 XXXXXXXXXXXFKVDHPFLFL 508
                      F  +HPFLFL
Sbjct: 338 IMLMSMPMNPVFYANHPFLFL 358


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
 Frame = +2

Query: 251 RIRSGLDLNTILPKVGVSKIFQE---PAPGIVKHDQVVVSKAFQEAFVKVDEEGATAGAF 421
           R+   L+L ++L  +GVS IF        GI     + VS A  +A ++V+E G  A A 
Sbjct: 242 RLSQKLELRSLLQDLGVSDIFDSRKADLSGISAAKGLYVSSAIHKAHIEVNERGTVAAAT 301

Query: 422 TGLIAVPTXXXXXXXXXXXFKVDHPFLFLFFTKTRYSLL 538
           TG++               F  DHPFLF    K   ++L
Sbjct: 302 TGVVMAKRSLDMNEV----FYADHPFLFSIHHKPSSAIL 336



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 22/83 (26%), Positives = 46/83 (55%)
 Frame = +3

Query: 3   KTTIKKPTMRLLQSLFYTENEELGAKMIELPYKEPGFRMVVVLPDKIDGLPAVLEKAAEK 182
           K  ++  T ++  + +Y  + ++  +++ELPY      MV++LP++  G+ + LEK+ + 
Sbjct: 163 KIEVEMMTRKMKVNFYY--DADIKCRVVELPYSGDDTAMVIILPEEPSGIFS-LEKSIDV 219

Query: 183 GLLEDVFNLSPAGRDIELEIPKF 251
            ++E    L      +E+ IPKF
Sbjct: 220 EIMEKWRRLM-INTTVEVSIPKF 241


>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 72  GAKMIELPYKEPGFRMVVVLPDKIDGLPAVLEKAAEK 182
           G K IEL   + G  M ++ PD++D   A++EK  E+
Sbjct: 164 GGKNIELAVMKKGEPMRILKPDEVDKFVAIIEKDKEE 200


>SB_39529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -2

Query: 330 PGAGSWNIFDTPTLGKIVLRSSPLRIRTWVS 238
           PGA SW   D  TL K+V R S   I+  VS
Sbjct: 270 PGAQSWKYVDDTTLAKVVPRDSCSSIQAAVS 300


>SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6)
          Length = 1130

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -2

Query: 369 KALETTTWSCLTMPGAGSWNIFDTPTLGKIVLRSSPLRIRTWVS 238
           +AL  +  + L  PGA SW   D  TL ++V R S   I+  VS
Sbjct: 153 RALALSMINDLHPPGAQSWKYVDDTTLAEVVPRDSCSSIQDAVS 196


>SB_47273| Best HMM Match : Pkinase_C (HMM E-Value=7.3)
          Length = 157

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 465 GGLDSEDVGTAISPVKAPAVAPSSSTFTKASWKALETTTWSC 340
           G  DSE   T I+   +PA+   +  F + SW+   T  W C
Sbjct: 19  GNFDSE---TVITHRLSPAIYTRTVRFLQKSWETFATCEWKC 57


>SB_49110| Best HMM Match : N6_Mtase (HMM E-Value=2.5e-05)
          Length = 311

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +3

Query: 84  IELPYK--EPGFRMVVVLPDKIDGLPAVLEKAAEKGLLEDVFNLSPAGRDIELEIPK 248
           IE  YK  +PG +M +VLPD I G P  L     + +LE+   L+     +E  +P+
Sbjct: 154 IEACYKLLKPGGKMAIVLPDGILGNPNTL--PVREWILENFKILASVDLAVEAFLPQ 208


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,782,369
Number of Sequences: 59808
Number of extensions: 371559
Number of successful extensions: 1090
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)