Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30668
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    30   0.29 
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    30   0.29 
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    30   0.29 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    30   0.39 
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   2.7  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    26   6.3  
SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.4  
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    25   8.4  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    25   8.4  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +1

Query: 463 IQKLTSFGNSAQG-ITKARNQYQILTLVHPRRTIMSMAVIH----LDRDFHSR 606
           I+    F  SAQ  +T  RN  ++ T+VH    + S  +IH    LDR+F +R
Sbjct: 169 IESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATR 221


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +1

Query: 463 IQKLTSFGNSAQG-ITKARNQYQILTLVHPRRTIMSMAVIH----LDRDFHSR 606
           I+    F  SAQ  +T  RN  ++ T+VH    + S  +IH    LDR+F +R
Sbjct: 169 IESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATR 221


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +1

Query: 463 IQKLTSFGNSAQG-ITKARNQYQILTLVHPRRTIMSMAVIH----LDRDFHSR 606
           I+    F  SAQ  +T  RN  ++ T+VH    + S  +IH    LDR+F +R
Sbjct: 169 IESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATR 221


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -2

Query: 229 GNAHFIQNATPTRQFTKW-IPYLNLGPL 149
           GN +F+QNA PT++  +W I ++++  L
Sbjct: 650 GNVYFVQNAIPTKRQNRWRITFISISGL 677


>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 517 CEL*LYPVRYSQMKSIFVFLLQVYATLRIGLSVTVICGIF 398
           CE  LYP  +   +S   FL  +++ L + +S+ V C ++
Sbjct: 34  CECFLYPKLFDSQRSPSPFLRWLFSVLGVLMSMDVFCILY 73


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +3

Query: 159 RFKYGIHFVNCLVGVAFCIKWALPDFTRFYLKIHNNNSL 275
           R K       CL+ V  C+    P   RF+ K H  + L
Sbjct: 259 RLKLDSFVYQCLLFVGKCVNRVTPYLERFWFKCHYGSKL 297


>SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 123

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 398 KDATDNSYRQPYPQSGVHLKEEY 466
           KDA D  Y+Q    +G  +KEE+
Sbjct: 76  KDAKDTDYQQKAKDAGKKIKEEF 98


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 173 YPFCELPCW 199
           +P+C LPCW
Sbjct: 21  FPYCSLPCW 29


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 521 WLRALVIPCALFPNEVNFCIPP 456
           +++A  +    F NEVNFCI P
Sbjct: 23  YIKAKNVEIDAFNNEVNFCIAP 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,506
Number of Sequences: 5004
Number of extensions: 50826
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)