Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30668
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75711-7|CAB00031.2|  380|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF286377-1|AAG10298.1|  380|Caenorhabditis elegans POU family II...    28   5.9  

>Z75711-7|CAB00031.2|  380|Caenorhabditis elegans Hypothetical
           protein K02B12.1 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 347 DQ*VLPTYRFHHHQIN 300
           DQ +LP Y  HHH IN
Sbjct: 32  DQNILPNYHLHHHLIN 47


>AF286377-1|AAG10298.1|  380|Caenorhabditis elegans POU family III
           homeodomain proteinCEH-6 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 347 DQ*VLPTYRFHHHQIN 300
           DQ +LP Y  HHH IN
Sbjct: 32  DQNILPNYHLHHHLIN 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,702,651
Number of Sequences: 27780
Number of extensions: 283689
Number of successful extensions: 518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)