Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30668
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59070.1 68418.m07401 glycosyl transferase family 1 protein c...    29   4.2  
At4g32190.1 68417.m04581 centromeric protein-related low similar...    29   4.2  
At5g05140.1 68418.m00545 transcription elongation factor-related...    28   5.5  
At5g42630.1 68418.m05189 myb family transcription factor (KAN4) ...    27   9.6  
At3g19610.1 68416.m02486 hypothetical protein                          27   9.6  
At1g57690.1 68414.m06547 F-box family protein contains F-box dom...    27   9.6  

>At5g59070.1 68418.m07401 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 505

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -3

Query: 96  ILSFLN*IMRFDSYLCSC*FSHHKYL 19
           +LSF++ + R ++ LCSC + H+ Y+
Sbjct: 26  LLSFVSFLFRHNTSLCSCLYDHNTYV 51


>At4g32190.1 68417.m04581 centromeric protein-related low similarity
           to SP|Q02224 Centromeric protein E (CENP-E protein)
           {Homo sapiens}
          Length = 783

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +3

Query: 306 LVMMEAVCWKDSLILVVQTALLAAHHQQEIIKMPQITVTDNPILKVAY 449
           L +  A+ +KD  I VV   L A   +QE+ K+ + T+ D+  LKV Y
Sbjct: 626 LAVQRALTFKDEEINVVMGRLEAK--EQELKKLKEETINDSEDLKVLY 671


>At5g05140.1 68418.m00545 transcription elongation factor-related
           low similarity to transcription elongation factor
           TFIIS.h [Mus musculus] GI:3288547, elongin A [Mus
           musculus] GI:6009624
          Length = 436

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 9   RSVLNICDVRINNCISKSRISLSNLKTIKLLHCKTDILKKRSIKCYLNGPR 161
           + V  I ++ +N     + + L +L+ +KL+    DILK   I   +NG R
Sbjct: 139 KEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTEIGKAVNGLR 189


>At5g42630.1 68418.m05189 myb family transcription factor (KAN4)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to  cDNA GARP-like putative
           transcription factor KANADI4 (KAN4)  GI:15723592
          Length = 276

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 57  KSRISLSNLKTIKLLHCKTDILKKRSIKC 143
           KS + L N+K + L H K+ +   R++KC
Sbjct: 134 KSVLELMNVKDLTLAHVKSHLQMYRTVKC 162


>At3g19610.1 68416.m02486 hypothetical protein
          Length = 612

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 51  ISKSRISLSNLKTIKLLHCKTDILK 125
           +SKSR+ + +L T K  HC  +I+K
Sbjct: 386 LSKSRLIIQSLSTEKTEHCNANIVK 410


>At1g57690.1 68414.m06547 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 330

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +3

Query: 72  LSNLKTIKLLHCKTDILKKRSIKCYLNGPRFKYGIHFVNCLVGVAFCIKWALPDFTRFYL 251
           +S+L  + L H       K +I+  +   R+++    +N  +      ++  P    F+L
Sbjct: 28  ISSLPDVILQHILFSFQTKYAIRTSVLSKRWRHEADAINKALS-----QYTAPKMMNFHL 82

Query: 252 KIHNNNSL-VIE*WT 293
           KI+ NNSL  I+ WT
Sbjct: 83  KINKNNSLHHIKKWT 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,659,585
Number of Sequences: 28952
Number of extensions: 257754
Number of successful extensions: 443
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)