Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30667
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...    99   3e-22
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...    93   2e-20
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   3.8  
SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz...    26   5.1  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   5.1  
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe...    26   5.1  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   6.7  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    25   6.7  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   8.8  

>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score =   99 bits (238), Expect = 3e-22
 Identities = 47/84 (55%), Positives = 61/84 (72%)
 Frame = +1

Query: 256 RDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGAN 435
           RD  K+++ GKGVL A+ N+N +IAP + KANL+VT Q+  DE +LKLDGTENKSKLGAN
Sbjct: 50  RDGDKTKWGGKGVLKAVGNVNNIIAPAVVKANLDVTDQKAADEFLLKLDGTENKSKLGAN 109

Query: 436 AILGVSLXXXXXXXXXXNVPLYKH 507
           AILGVS+           +PL+K+
Sbjct: 110 AILGVSMAICRAGAAQKKLPLWKY 133



 Score = 74.9 bits (176), Expect = 8e-15
 Identities = 35/48 (72%), Positives = 40/48 (83%)
 Frame = +2

Query: 110 MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALE 253
           M I+ + ARQI+DSRGNPTVEVDL TE G+ RA VPSGASTG+ EALE
Sbjct: 1   MAIQKVFARQIYDSRGNPTVEVDLTTETGIHRAIVPSGASTGIWEALE 48



 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = +3

Query: 462 C*GWCCQEKCSAVQALADLAGNND-IVLPVPAFNVINGGSHAGNKLAMQEFMI 617
           C     Q+K    + +A+  G     VLPVP+FNV+NGGSHAG  LA QEFMI
Sbjct: 119 CRAGAAQKKLPLWKYIAENFGTKGPYVLPVPSFNVLNGGSHAGGDLAFQEFMI 171


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score = 93.5 bits (222), Expect = 2e-20
 Identities = 41/84 (48%), Positives = 60/84 (71%)
 Frame = +1

Query: 256 RDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGAN 435
           RDN K+++ GKGV  A+ N+N +I P L K+++++T QR IDE M+KLDGT +KSKLGAN
Sbjct: 51  RDNDKNKWGGKGVTIAVHNVNNIIGPALVKSDIKITDQRGIDEFMIKLDGTNDKSKLGAN 110

Query: 436 AILGVSLXXXXXXXXXXNVPLYKH 507
           +I+GVS+           +PLY++
Sbjct: 111 SIVGVSMAVARAAAAFLKIPLYEY 134



 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 32/46 (69%), Positives = 37/46 (80%)
 Frame = +2

Query: 116 IKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALE 253
           I+ I +R I+DSRGNPTVEV+L TELG FR+ VPSGASTG  EA E
Sbjct: 4   IQKIYSRSIYDSRGNPTVEVELTTELGTFRSMVPSGASTGEWEAKE 49



 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +3

Query: 486 KCSAVQALADLAGNNDI-VLPVPAFNVINGGSHAGNKLAMQEFMI 617
           K    + +  LAG+     +PVP+FNV+NGG HAG  LA QEFMI
Sbjct: 128 KIPLYEYIGKLAGSKTTECIPVPSFNVLNGGRHAGGDLAFQEFMI 172


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 417 FVLSAIQLKHEFINLSLLGYFKVGFG 340
           F +S+I+ KH++IN+    Y  +G G
Sbjct: 113 FSISSIKTKHDYINIIKKHYVSLGVG 138


>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 622 GKIMNSCMASLFPACDPPLITLKAGTGRTISL 527
           G+ +N  +  LFP+CD  LI      G TI L
Sbjct: 205 GEFLNKRLPDLFPSCDKFLIVKPVIHGITIFL 236


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 453 PSCC*GWCCQEK 488
           PSCC G CC+E+
Sbjct: 490 PSCCGGHCCKEE 501


>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +1

Query: 259 DNIKSEY-HGKGVLTAIKNINELIAPELTKANLEVTQQRE-IDELMLKLDGTENKSK 423
           D++K E    KG +T +KN  + +  E T    EVT  ++ I +L  K+D  + +++
Sbjct: 225 DSVKGEMAEMKGEMTIMKNDIDSVKGETTTLKGEVTAMKDSISQLDRKIDLLDQRTE 281


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 487 NVPLYKHWLIWLEIMILFYLYQLSM*SMEDHMLE 588
           N+PL   W+ W+E+    + YQ+   S  +  LE
Sbjct: 549 NMPLDNGWIGWVELKRQVFSYQIGSISSLEKKLE 582


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -2

Query: 387 EFI-NLSLLGYFKVGFG-KFRSNEFIDIFDCGQNSLAMIFTLDVISRSRAS*TPVE 226
           EF+ N+SL+G+ K GFG  +   +   +     +S  + + L+  SR     TPV+
Sbjct: 171 EFLPNISLIGHKKEGFGLSWNRQQNCRLVTAANDSKILEWDLNNFSRDTRCLTPVK 226


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 143 FDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALEREITS 268
           F     PTV VDL     L RA  P   STG +   +  I+S
Sbjct: 528 FSRYNQPTVSVDLRNSSILRRAQEPVNGSTGENHIGDDYISS 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,856
Number of Sequences: 5004
Number of extensions: 43086
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)