Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30667
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 91 5e-19
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 73 1e-13
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 72 4e-13
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 71 1e-12
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 52 5e-07
11_01_0660 + 5382460-5382764,5383854-5384348,5384454-5384541,538... 29 2.3
01_06_0453 + 29501600-29502403 28 5.2
06_03_0535 + 21897912-21898064,21898151-21898246,21898362-218984... 27 9.1
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 91.5 bits (217), Expect = 5e-19
Identities = 46/84 (54%), Positives = 57/84 (67%)
Frame = +1
Query: 256 RDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGAN 435
RD + Y GKGVL A++NINE+IAP+L ++V Q ++D +ML +DGT NKSKLGAN
Sbjct: 99 RDGDGAAYGGKGVLNAVRNINEVIAPKLV--GVDVRNQSDVDAIMLDIDGTPNKSKLGAN 156
Query: 436 AILGVSLXXXXXXXXXXNVPLYKH 507
AILGVSL VPLYKH
Sbjct: 157 AILGVSLSVCRAGAGAKEVPLYKH 180
Score = 71.3 bits (167), Expect = 6e-13
Identities = 36/48 (75%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Frame = +2
Query: 113 VIKSIKARQIFDSRGNPTVEVDLVTELG-LFRAAVPSGASTGVHEALE 253
V++SI+ARQI DSRGNPTVEVDLV G L R+AVPSGASTG++EALE
Sbjct: 50 VVRSIRARQIVDSRGNPTVEVDLVAGDGRLHRSAVPSGASTGIYEALE 97
Score = 64.9 bits (151), Expect = 5e-11
Identities = 27/37 (72%), Positives = 33/37 (89%)
Frame = +3
Query: 507 LADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMI 617
+ +LAG ++V+PVPAFNVINGGSHAGN LAMQEFM+
Sbjct: 181 IQELAGTKELVMPVPAFNVINGGSHAGNNLAMQEFML 217
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 73.3 bits (172), Expect = 1e-13
Identities = 37/47 (78%), Positives = 41/47 (87%), Gaps = 1/47 (2%)
Frame = +2
Query: 116 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALE 253
I+S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALE
Sbjct: 5 IQSVKARQIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALE 51
Score = 65.3 bits (152), Expect = 4e-11
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Frame = +1
Query: 271 SEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLK-LDGTEN-----KSKLGA 432
S+Y GKGVL A+ N+N +I P L + T+Q ID M++ LDGT+N K KLGA
Sbjct: 57 SDYLGKGVLKAVDNVNSIIGPALI--GKDPTEQTVIDNFMVQQLDGTKNEWGWCKQKLGA 114
Query: 433 NAILGVSLXXXXXXXXXXNVPLYKHWLI 516
NAIL VSL +PLY+ ++I
Sbjct: 115 NAILAVSLALCKAGAIIKKIPLYQEFMI 142
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 71.7 bits (168), Expect = 4e-13
Identities = 37/47 (78%), Positives = 40/47 (85%), Gaps = 1/47 (2%)
Frame = +2
Query: 116 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALE 253
I S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALE
Sbjct: 5 IVSVKARQIFDSRGNPTVEVDVCCSDGTFARAAVPSGASTGVYEALE 51
Score = 69.3 bits (162), Expect = 2e-12
Identities = 34/46 (73%), Positives = 38/46 (82%), Gaps = 1/46 (2%)
Frame = +3
Query: 483 EKCSAVQALADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQ-EFMI 617
+K Q +A+LAGN +VLPVPAFNVINGGSHAGNKLAMQ EFMI
Sbjct: 132 KKIPLYQHIANLAGNKQLVLPVPAFNVINGGSHAGNKLAMQAEFMI 177
Score = 65.7 bits (153), Expect = 3e-11
Identities = 39/85 (45%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Frame = +1
Query: 271 SEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLK-LDGTEN-----KSKLGA 432
S+Y GKGV A+ N+N +IAP L + T Q E+D M++ LDGT+N K KLGA
Sbjct: 57 SDYLGKGVSKAVDNVNSVIAPALI--GKDPTSQAELDNFMVQQLDGTKNEWGWCKQKLGA 114
Query: 433 NAILGVSLXXXXXXXXXXNVPLYKH 507
NAIL VSL +PLY+H
Sbjct: 115 NAILAVSLAICKAGAIIKKIPLYQH 139
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 70.5 bits (165), Expect = 1e-12
Identities = 35/51 (68%), Positives = 42/51 (82%), Gaps = 1/51 (1%)
Frame = +2
Query: 104 LKMVIKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALE 253
+ + I+S+KARQIFDSRGNPTVEVD+ G F R AVPSGASTG++EALE
Sbjct: 1 MAVTIQSVKARQIFDSRGNPTVEVDVGLSDGSFARGAVPSGASTGIYEALE 51
Score = 64.9 bits (151), Expect = 5e-11
Identities = 29/36 (80%), Positives = 33/36 (91%)
Frame = +3
Query: 498 VQALADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQ 605
+Q +A+LAGN +VLPVPAFNVINGGSHAGNKLAMQ
Sbjct: 140 LQHIANLAGNKTLVLPVPAFNVINGGSHAGNKLAMQ 175
Score = 62.9 bits (146), Expect = 2e-10
Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Frame = +1
Query: 271 SEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELML-KLDGTEN-----KSKLGA 432
S+Y GKGVL A+ N+N +I P L + T+Q +ID M+ +LDGT N K KLGA
Sbjct: 57 SDYLGKGVLKAVSNVNTIIGPAL--IGKDPTEQVDIDNFMVQQLDGTSNNWGWCKQKLGA 114
Query: 433 NAILGVSLXXXXXXXXXXNVPLYK 504
NAIL VSL +PLY+
Sbjct: 115 NAILAVSLAVCKAGAMVKKIPLYQ 138
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/54 (40%), Positives = 33/54 (61%)
Frame = +3
Query: 456 SCC*GWCCQEKCSAVQALADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMI 617
+ C +++ + +A+L G + LP+PA VINGG+HAGN L +QE MI
Sbjct: 159 AACKAGAAEKEVPLYKHIAELVGKSATTLPIPAITVINGGTHAGNSLPIQEIMI 212
Score = 50.8 bits (116), Expect = 9e-07
Identities = 26/84 (30%), Positives = 46/84 (54%)
Frame = +1
Query: 256 RDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGAN 435
RD K + + V A++ IN+ ++ L ++ QQ +ID+ ++ LD +K+++G N
Sbjct: 94 RDAEKRKLLARAVADAVRVINDKVSEALV--GMDPQQQSQIDQAIMDLDKAHHKAEIGVN 151
Query: 436 AILGVSLXXXXXXXXXXNVPLYKH 507
++L VS+ VPLYKH
Sbjct: 152 SMLAVSIAACKAGAAEKEVPLYKH 175
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Frame = +2
Query: 113 VIKSIKARQIFDSRGNPTVEVDLVTELGLFRAA-----VPSGAST-GVHEALEREITSR 271
VI S++ARQI D RG P VEV L T + RA+ P GA+ V +A +R++ +R
Sbjct: 46 VITSVRARQILDGRGEPAVEVSLHTNKAVHRASAAAADAPEGAAADAVRDAEKRKLLAR 104
>11_01_0660 +
5382460-5382764,5383854-5384348,5384454-5384541,
5384629-5384691,5384965-5385125,5385214-5385289,
5385395-5385454,5385555-5385662,5385746-5385982,
5386192-5386307,5386756-5386813
Length = 588
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +1
Query: 253 TRDNIKSEYHGKGVL--TAIKNINELIAPELTKANLEV 360
TRD + + GKG + T+ ++++ L P+LT NL+V
Sbjct: 517 TRDTFPTSFDGKGAMVQTSNRSLSPLRDPDLTMRNLQV 554
>01_06_0453 + 29501600-29502403
Length = 267
Score = 28.3 bits (60), Expect = 5.2
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = -2
Query: 264 VISRSRAS*TPVEAPEGTAARNKPSSVTRSTST--VGLPRESKI*RALIDFITIFNTELD 91
V+ RA P AP AR S+ T VGL S + DFI F +L
Sbjct: 190 VLQVQRAQPPPPRAPAPAPARAVKSAAREEVETAQVGLATASSVDARADDFINKFREQLQ 249
Query: 90 FLKLSVIL 67
+L+ +L
Sbjct: 250 LQRLNSLL 257
>06_03_0535 +
21897912-21898064,21898151-21898246,21898362-21898474,
21898590-21898656,21898741-21898833,21898968-21899111,
21899693-21899781,21899910-21900015,21900119-21900206,
21900304-21900422,21900913-21901247,21901824-21901933,
21902070-21902179,21902303-21902413,21902870-21903174,
21903267-21903375
Length = 715
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/59 (18%), Positives = 29/59 (49%)
Frame = +2
Query: 104 LKMVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALEREITSRVNI 280
++ ++ +K+ +F+ +G P + + E G + + SGA + V A + + + +
Sbjct: 150 VEKIVSMMKSEGLFEWQGGPIILAQVENEYGPMESVMGSGAKSYVDWAAKMAVATNAGV 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,803,617
Number of Sequences: 37544
Number of extensions: 282432
Number of successful extensions: 683
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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