Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30667
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)                   73   2e-13
SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)               64   9e-11
SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)             31   1.00 
SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)            29   4.0  
SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)            28   5.3  
SB_825| Best HMM Match : EGF (HMM E-Value=5.6e-08)                     28   7.0  
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_27495| Best HMM Match : VWA (HMM E-Value=0)                         27   9.3  

>SB_17335| Best HMM Match : Enolase_C (HMM E-Value=0)
          Length = 284

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 31/37 (83%), Positives = 35/37 (94%)
 Frame = +3

Query: 507 LADLAGNNDIVLPVPAFNVINGGSHAGNKLAMQEFMI 617
           +A LAGNN ++LPVPAFNVINGGSHAGNKLAMQEFM+
Sbjct: 32  IAGLAGNNQVILPVPAFNVINGGSHAGNKLAMQEFML 68


>SB_29862| Best HMM Match : Enolase_N (HMM E-Value=6e-20)
          Length = 115

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 28/54 (51%), Positives = 38/54 (70%)
 Frame = +1

Query: 256 RDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENK 417
           RD   S++ GKGV  A+ N+N +I P L   N++VT Q +ID +ML+LDGTENK
Sbjct: 61  RDKDASKFLGKGVSQAVNNVNTIIGPALVSKNVDVTAQEDIDNMMLQLDGTENK 114



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +2

Query: 194 GLFRAAVPSGASTGVHEALE 253
           G FRAAVPSGASTG++EALE
Sbjct: 40  GTFRAAVPSGASTGIYEALE 59


>SB_28893| Best HMM Match : Enolase_C (HMM E-Value=5.6e-07)
          Length = 133

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 558 NVINGGSHAGNKLAMQEFMI 617
           N++NGG+HA + + +QEFMI
Sbjct: 2   NILNGGAHADSDVDIQEFMI 21


>SB_21143| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.42)
          Length = 870

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +1

Query: 298 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKS 420
           TA KN+ +  A ELT  N + TQ+ +  +L   L  TEN++
Sbjct: 679 TAKKNLEKARAAELTAVNQQATQREQ--QLTTLLQETENRN 717


>SB_18551| Best HMM Match : RNA_pol_Rpc82 (HMM E-Value=0.69)
          Length = 348

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 262 NIKSEYHGKGVLTAIKNINELIAPELTK--ANLEVTQQRE 375
           N+K+E+ G+    AI ++ EL+ P   +    L++TQ R+
Sbjct: 219 NLKAEHGGEAAADAISDLQELVTPAEREMLMKLKITQARQ 258


>SB_825| Best HMM Match : EGF (HMM E-Value=5.6e-08)
          Length = 316

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +1

Query: 298 TAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAIL 444
           T + +I E  A E+T+    V  +   D L+++++G EN+S+   N I+
Sbjct: 230 TGVGSIEE-DAAEITERLETVATRETTDLLLIRVEGLENRSRRNNNIII 277


>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1888

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 25/81 (30%), Positives = 34/81 (41%)
 Frame = +2

Query: 50   VQFC*IRITLNLRKSSSVLKMVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGAS 229
            VQF   R   NL   S+VL  + KS  + Q FD R   T++VD  +  GL    +     
Sbjct: 1292 VQFL-SRFIPNLSSVSAVLWDLTKSSSSLQYFDGRKPVTIQVD-ASSRGLGATLLQEKGP 1349

Query: 230  TGVHEALEREITSRVNIMARE 292
                  L  E   R + + RE
Sbjct: 1350 VEYRSKLLTETEQRYSNIERE 1370


>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1064

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 441 DSISTQFGFVLSAIQLKHEFINLSLLGYFKVGFGKFRSNEFID 313
           + + T F      ++ +H F    + GY + GF KFRS + +D
Sbjct: 633 EKLCTGFDVAERQLRKQHSFWFNDVCGYNQKGFRKFRSEQELD 675


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,855,968
Number of Sequences: 59808
Number of extensions: 320353
Number of successful extensions: 740
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)