Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30666
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   137   5e-33
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   136   9e-33
U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical pr...    33   0.16 
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    29   2.0  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    29   3.5  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    29   3.5  
Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF024495-1|AAB70338.3|  399|Caenorhabditis elegans Nuclear hormo...    27   8.1  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  137 bits (332), Expect = 5e-33
 Identities = 62/86 (72%), Positives = 73/86 (84%)
 Frame = +3

Query: 255 RGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVL 434
           RG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG+DFYVVL
Sbjct: 82  RGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMDFYVVL 141

Query: 435 GRTGFNVAHRRRKTGKVGFPHRLTKK 512
            R G  +A RRR  G+VG  HR+ ++
Sbjct: 142 DRAGRRIAKRRRAPGRVGPSHRVERE 167



 Score =  129 bits (312), Expect = 1e-30
 Identities = 62/76 (81%), Positives = 68/76 (89%)
 Frame = +1

Query: 55  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 234
           ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEK
Sbjct: 15  ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74

Query: 235 IAVHCTVEELKQKKSL 282
           IAVHCTV   K ++ L
Sbjct: 75  IAVHCTVRGPKAEEIL 90



 Score = 37.1 bits (82), Expect = 0.010
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +2

Query: 485 GISPPPHKEDAMKWFQQKYDGIILNSK 565
           G S    +E+++KWFQQKYDGIIL  K
Sbjct: 159 GPSHRVEREESIKWFQQKYDGIILPPK 185


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  136 bits (330), Expect = 9e-33
 Identities = 61/86 (70%), Positives = 72/86 (83%)
 Frame = +3

Query: 255 RGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVL 434
           RG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+DFYVVL
Sbjct: 82  RGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVL 141

Query: 435 GRTGFNVAHRRRKTGKVGFPHRLTKK 512
            R G  V+ RRR  G++G  HR+ K+
Sbjct: 142 NRNGVRVSKRRRAPGRIGPSHRVDKE 167



 Score =  129 bits (311), Expect = 2e-30
 Identities = 62/75 (82%), Positives = 67/75 (89%)
 Frame = +1

Query: 58  KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 237
           +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKI
Sbjct: 16  RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKI 75

Query: 238 AVHCTVEELKQKKSL 282
           AVHCTV   K ++ L
Sbjct: 76  AVHCTVRGPKAEEIL 90



 Score = 37.9 bits (84), Expect = 0.006
 Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +2

Query: 476 RKSGISPPPH---KEDAMKWFQQKYDGIILNSK 565
           R  G   P H   KE+ +KWFQQKYDGIIL  K
Sbjct: 153 RAPGRIGPSHRVDKEETIKWFQQKYDGIILPPK 185


>U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical
           protein F18F11.3 protein.
          Length = 427

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 390 DPSIGIYGLDFYVVLGRTGFNVAHRRRKTGKVGFPHRLTKKM 515
           DP  GI G+  + V G + F +A R+  +GK     RL KK+
Sbjct: 160 DPDTGISGISRFSVEGDSSFTLAKRKCSSGKCSTQLRLAKKL 201


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 255 RGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 407
           R   AEE+  RG  +  Y E+RR     TG FG G +  +   I +  S+ +
Sbjct: 355 REQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
            domain protein 1 protein.
          Length = 1346

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 166  GQQPVFSKARYTVRSFGIRRNEKIAVHCTVEELKQKKSLRGV*KSENMNCGVTTSPP-RV 342
            G  P F  A+  V+ F  ++ ++  V    E   Q  S+  + +S+ +N G+T  PP  V
Sbjct: 856  GAVPTFD-AKKIVQLFETKKEKEAPVKKVAETKTQTLSVLPLKRSQAINIGLTKLPPINV 914

Query: 343  ILASVFK 363
            I A++ K
Sbjct: 915  IPAAIMK 921


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin protein.
          Length = 1346

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 166  GQQPVFSKARYTVRSFGIRRNEKIAVHCTVEELKQKKSLRGV*KSENMNCGVTTSPP-RV 342
            G  P F  A+  V+ F  ++ ++  V    E   Q  S+  + +S+ +N G+T  PP  V
Sbjct: 856  GAVPTFD-AKKIVQLFETKKEKEAPVKKVAETKTQTLSVLPLKRSQAINIGLTKLPPINV 914

Query: 343  ILASVFK 363
            I A++ K
Sbjct: 915  IPAAIMK 921


>Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical protein
            T28F3.5 protein.
          Length = 1679

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 476  RKSGISPPPHKEDAMKWFQQKYDGI 550
            +K+ I P P   +A+ W Q+K DG+
Sbjct: 1588 QKAPIYPKPSLSEALDWVQKKIDGV 1612


>AF024495-1|AAB70338.3|  399|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 125 protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 237 CCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNF 347
           C   + +  + ++  E G+   +++  RD+F ATG F
Sbjct: 55  CSRNFCKRCRLKKCREMGMDTTKFQYNRDSFRATGQF 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,578,935
Number of Sequences: 27780
Number of extensions: 298795
Number of successful extensions: 790
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)