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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30666
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)           132   2e-31
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)           131   4e-31
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)           131   4e-31
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)           131   4e-31
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo...   131   4e-31
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi...    37   0.012
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con...    36   0.016
At4g30990.1 68417.m04398 expressed protein ; expression supporte...    29   1.9  
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi...    29   2.5  
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00...    29   2.5  
At4g14280.1 68417.m02201 hypothetical protein                          28   5.7  
At3g55000.1 68416.m06104 tonneau family protein similar to tonne...    27   7.5  
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-...    27   10.0 
At5g48500.1 68418.m05997 expressed protein similar to unknown pr...    27   10.0 
At5g48180.1 68418.m05952 kelch repeat-containing protein contain...    27   10.0 
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa...    27   10.0 
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa...    27   10.0 

>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
          Length = 172

 Score =  132 bits (318), Expect = 2e-31
 Identities = 63/93 (67%), Positives = 71/93 (76%)
 Frame = +3

Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
           K  C +  RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 56  KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 115

Query: 411 GLDFYVVLGRTGFNVAHRRRKTGKVGFPHRLTK 509
           G+DFYVVL R G+ VA RRR   +VG  HR+TK
Sbjct: 116 GMDFYVVLERPGYRVARRRRCKARVGIQHRVTK 148



 Score =  104 bits (250), Expect = 4e-23
 Identities = 52/72 (72%), Positives = 60/72 (83%)
 Frame = +1

Query: 67  MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 246
           MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1   MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60

Query: 247 CTVEELKQKKSL 282
            TV   K  + L
Sbjct: 61  VTVRGEKAMQLL 72



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +2

Query: 485 GISPPPHKEDAMKWFQQKYDGIILNSKQS 571
           GI     K+DAMKWFQ KY+G+ILN  Q+
Sbjct: 141 GIQHRVTKDDAMKWFQVKYEGVILNKSQN 169


>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 
          Length = 182

 Score =  131 bits (316), Expect = 4e-31
 Identities = 63/93 (67%), Positives = 71/93 (76%)
 Frame = +3

Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
           K  C +  RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66  KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125

Query: 411 GLDFYVVLGRTGFNVAHRRRKTGKVGFPHRLTK 509
           G+DFYVVL R G+ VA RRR   +VG  HR+TK
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQHRVTK 158



 Score =  106 bits (254), Expect = 1e-23
 Identities = 53/74 (71%), Positives = 61/74 (82%)
 Frame = +1

Query: 61  NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 240
           N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9   NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68

Query: 241 VHCTVEELKQKKSL 282
            + TV   K  + L
Sbjct: 69  CYVTVRGEKAMQLL 82



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +2

Query: 485 GISPPPHKEDAMKWFQQKYDGIILNSKQS 571
           GI     K+DAMKWFQ KY+G+ILN  Q+
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEGVILNKSQN 179


>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 
          Length = 172

 Score =  131 bits (316), Expect = 4e-31
 Identities = 63/93 (67%), Positives = 71/93 (76%)
 Frame = +3

Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
           K  C +  RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 56  KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 115

Query: 411 GLDFYVVLGRTGFNVAHRRRKTGKVGFPHRLTK 509
           G+DFYVVL R G+ VA RRR   +VG  HR+TK
Sbjct: 116 GMDFYVVLERPGYRVARRRRCKTRVGIQHRVTK 148



 Score =  104 bits (250), Expect = 4e-23
 Identities = 52/72 (72%), Positives = 60/72 (83%)
 Frame = +1

Query: 67  MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 246
           MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1   MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60

Query: 247 CTVEELKQKKSL 282
            TV   K  + L
Sbjct: 61  VTVRGEKAMQLL 72



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +2

Query: 485 GISPPPHKEDAMKWFQQKYDGIILNSKQS 571
           GI     K+DAMKWFQ KY+G+ILN  Q+
Sbjct: 141 GIQHRVTKDDAMKWFQVKYEGVILNKSQN 169


>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
          Length = 182

 Score =  131 bits (316), Expect = 4e-31
 Identities = 63/93 (67%), Positives = 71/93 (76%)
 Frame = +3

Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
           K  C +  RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66  KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125

Query: 411 GLDFYVVLGRTGFNVAHRRRKTGKVGFPHRLTK 509
           G+DFYVVL R G+ VA RRR   +VG  HR+TK
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQHRVTK 158



 Score =  106 bits (254), Expect = 1e-23
 Identities = 53/74 (71%), Positives = 61/74 (82%)
 Frame = +1

Query: 61  NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 240
           N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9   NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68

Query: 241 VHCTVEELKQKKSL 282
            + TV   K  + L
Sbjct: 69  CYVTVRGEKAMQLL 82



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +2

Query: 485 GISPPPHKEDAMKWFQQKYDGIILNSKQS 571
           GI     K+DAMKWFQ KY+G+ILN  Q+
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEGVILNKSQN 179


>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
           ribosomal protein L11, cytosolic, Arabidopsis thaliana,
           PIR:S49033
          Length = 182

 Score =  131 bits (316), Expect = 4e-31
 Identities = 63/93 (67%), Positives = 71/93 (76%)
 Frame = +3

Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410
           K  C +  RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY
Sbjct: 66  KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125

Query: 411 GLDFYVVLGRTGFNVAHRRRKTGKVGFPHRLTK 509
           G+DFYVVL R G+ VA RRR   +VG  HR+TK
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQHRVTK 158



 Score =  106 bits (254), Expect = 1e-23
 Identities = 53/74 (71%), Positives = 61/74 (82%)
 Frame = +1

Query: 61  NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 240
           N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9   NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68

Query: 241 VHCTVEELKQKKSL 282
            + TV   K  + L
Sbjct: 69  CYVTVRGEKAMQLL 82



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +2

Query: 485 GISPPPHKEDAMKWFQQKYDGIILNSKQS 571
           GI     K+DAMKWFQ KY+G+ILN  Q+
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEGVILNKSQN 179


>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 665

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
 Frame = +3

Query: 273 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 437
           E+LE+GLK  EY +       S +G  G GI+ H   +D GIK D +IG   +D Y   G
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342


>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
           contains Pfam profiles PF00673: ribosomal L5P family
           C-terminus, PF00281: ribosomal protein L5
          Length = 262

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 17/68 (25%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
 Frame = +1

Query: 61  NVMRNLHIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 231
           N+ +   ++K+ +N  +G++      L  A K +  +TGQ+P+ ++AR ++ +F IR ++
Sbjct: 79  NIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQ 138

Query: 232 KIAVHCTV 255
            + +  T+
Sbjct: 139 PLGIAVTL 146


>At4g30990.1 68417.m04398 expressed protein ; expression supported
           by MPSS
          Length = 2138

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = -1

Query: 246 MDSNLFIT-TDTKRPHCIPSLGKYRLLSCELLQHLGGTS----QPVTGFTNTDVQAKLSD 82
           +DS+L I    T R H   S GKY+L+    L  L GT+      +TG  ++D++  LS 
Sbjct: 465 VDSSLLICFKKTLRQHLAVSDGKYQLMIHSFLHSLLGTTLRSCYKMTGINHSDLEEALSF 524

Query: 81  MK 76
            K
Sbjct: 525 AK 526


>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 748

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 249 YSRGAKAEEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLGIKYDPSIGIYGLDFY 425
           Y++    E+ +E  L+ RE  L+ D F+  G  GF G +  +DLG      + + GL   
Sbjct: 123 YTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQ 182

Query: 426 VVL 434
           V L
Sbjct: 183 VFL 185


>At3g06210.1 68416.m00714 expressed protein contains Prosite
           PS00616: Histidine acid phosphatases phosphohistidine
           signature;
          Length = 840

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = +1

Query: 187 KARYTVRSFGIRRNEKIAVHCTVEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVF-- 360
           +A +TV   GI  + ++    ++  L+  K +        ++ G+  +  R+    +F  
Sbjct: 140 QATWTVSGVGIS-SFRVLQSSSISLLRNLKRISDGIFKPILDNGLREATTRIGRQEIFDR 198

Query: 361 KNTLTWVSSTIPQLEFMDWTFTSYLAGQV 447
           + TLTW +S +P L +  W + S    ++
Sbjct: 199 RTTLTWKNSEVPLLPYARWLYISSYVSRI 227


>At4g14280.1 68417.m02201 hypothetical protein
          Length = 798

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 367 TLTWVSSTIPQLEFMDWTFTS 429
           T TW SS +P L +  W F S
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187


>At3g55000.1 68416.m06104 tonneau family protein similar to tonneau
           1b (GI:11494367) [Arabidopsis thaliana]
          Length = 260

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 437 PDRFQRSTQKA*DRKSGISPPPHKEDAMKWFQQKYD 544
           P R   S  +A DR++G+S   +++D   W Q   D
Sbjct: 183 PQRRPVSASQASDRRAGLSTSGYRKDEFNWRQGNQD 218


>At5g53430.1 68418.m06640 PHD finger family protein / SET
           domain-containing protein (TX5) contains Pfam domain,
           PF00628: PHD-finger and PF00856: SET domain; identical
           to cDNA  trithorax 5 (TX5) partial cds GI:16118406
          Length = 1043

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 515 HLLCEAVGKSHFSCLTPSVCYVETCPAKYDVKV 417
           H  C+ +   HF  L  +  Y  TC  K+D ++
Sbjct: 442 HSACDQISHKHFKDLGETDYYCPTCRTKFDFEL 474


>At5g48500.1 68418.m05997 expressed protein similar to unknown
           protein (gb|AAD28645.1)
          Length = 167

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 269 CFSSSTVQWTAIFSLRRIPKDRTVYLA 189
           CF ++T Q  A       P+DR +YLA
Sbjct: 33  CFETATTQQPAFLHYASYPQDRDLYLA 59


>At5g48180.1 68418.m05952 kelch repeat-containing protein contains
           Pfam PF01344: Kelch motif (5 repeats) ;similar to Tip
           elongation aberrant protein 1 (Cell polarity protein
           tea1) (SP:P87061) [Schizosaccharomyces pombe]
          Length = 326

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 284 LKDFFCFSSSTVQWTAIFSLRRIPKDRTVYLAL 186
           L D  CF  ++ QW A+ +   +P  R+V+ A+
Sbjct: 196 LGDIHCFDLASEQWKAVETTGDVPAARSVFPAV 228


>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
           domain PF00929: exonuclease
          Length = 344

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 60  KCNAESSYQKALLEHLCW 113
           K NAE  YQK+  E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336


>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
           domain PF00929: exonuclease
          Length = 344

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 60  KCNAESSYQKALLEHLCW 113
           K NAE  YQK+  E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,834,895
Number of Sequences: 28952
Number of extensions: 280068
Number of successful extensions: 785
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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