BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30666 (618 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 132 2e-31 At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 131 4e-31 At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 131 4e-31 At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 131 4e-31 At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 131 4e-31 At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 37 0.012 At4g01310.1 68417.m00171 ribosomal protein L5 family protein con... 36 0.016 At4g30990.1 68417.m04398 expressed protein ; expression supporte... 29 1.9 At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 29 2.5 At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 29 2.5 At4g14280.1 68417.m02201 hypothetical protein 28 5.7 At3g55000.1 68416.m06104 tonneau family protein similar to tonne... 27 7.5 At5g53430.1 68418.m06640 PHD finger family protein / SET domain-... 27 10.0 At5g48500.1 68418.m05997 expressed protein similar to unknown pr... 27 10.0 At5g48180.1 68418.m05952 kelch repeat-containing protein contain... 27 10.0 At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 27 10.0 At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 27 10.0 >At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) Length = 172 Score = 132 bits (318), Expect = 2e-31 Identities = 63/93 (67%), Positives = 71/93 (76%) Frame = +3 Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410 K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY Sbjct: 56 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 115 Query: 411 GLDFYVVLGRTGFNVAHRRRKTGKVGFPHRLTK 509 G+DFYVVL R G+ VA RRR +VG HR+TK Sbjct: 116 GMDFYVVLERPGYRVARRRRCKARVGIQHRVTK 148 Score = 104 bits (250), Expect = 4e-23 Identities = 52/72 (72%), Positives = 60/72 (83%) Frame = +1 Query: 67 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 246 MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60 Query: 247 CTVEELKQKKSL 282 TV K + L Sbjct: 61 VTVRGEKAMQLL 72 Score = 41.1 bits (92), Expect = 6e-04 Identities = 17/29 (58%), Positives = 21/29 (72%) Frame = +2 Query: 485 GISPPPHKEDAMKWFQQKYDGIILNSKQS 571 GI K+DAMKWFQ KY+G+ILN Q+ Sbjct: 141 GIQHRVTKDDAMKWFQVKYEGVILNKSQN 169 >At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) Length = 182 Score = 131 bits (316), Expect = 4e-31 Identities = 63/93 (67%), Positives = 71/93 (76%) Frame = +3 Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410 K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125 Query: 411 GLDFYVVLGRTGFNVAHRRRKTGKVGFPHRLTK 509 G+DFYVVL R G+ VA RRR +VG HR+TK Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQHRVTK 158 Score = 106 bits (254), Expect = 1e-23 Identities = 53/74 (71%), Positives = 61/74 (82%) Frame = +1 Query: 61 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 240 N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68 Query: 241 VHCTVEELKQKKSL 282 + TV K + L Sbjct: 69 CYVTVRGEKAMQLL 82 Score = 41.1 bits (92), Expect = 6e-04 Identities = 17/29 (58%), Positives = 21/29 (72%) Frame = +2 Query: 485 GISPPPHKEDAMKWFQQKYDGIILNSKQS 571 GI K+DAMKWFQ KY+G+ILN Q+ Sbjct: 151 GIQHRVTKDDAMKWFQVKYEGVILNKSQN 179 >At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) Length = 172 Score = 131 bits (316), Expect = 4e-31 Identities = 63/93 (67%), Positives = 71/93 (76%) Frame = +3 Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410 K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY Sbjct: 56 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 115 Query: 411 GLDFYVVLGRTGFNVAHRRRKTGKVGFPHRLTK 509 G+DFYVVL R G+ VA RRR +VG HR+TK Sbjct: 116 GMDFYVVLERPGYRVARRRRCKTRVGIQHRVTK 148 Score = 104 bits (250), Expect = 4e-23 Identities = 52/72 (72%), Positives = 60/72 (83%) Frame = +1 Query: 67 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 246 MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60 Query: 247 CTVEELKQKKSL 282 TV K + L Sbjct: 61 VTVRGEKAMQLL 72 Score = 41.1 bits (92), Expect = 6e-04 Identities = 17/29 (58%), Positives = 21/29 (72%) Frame = +2 Query: 485 GISPPPHKEDAMKWFQQKYDGIILNSKQS 571 GI K+DAMKWFQ KY+G+ILN Q+ Sbjct: 141 GIQHRVTKDDAMKWFQVKYEGVILNKSQN 169 >At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) Length = 182 Score = 131 bits (316), Expect = 4e-31 Identities = 63/93 (67%), Positives = 71/93 (76%) Frame = +3 Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410 K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125 Query: 411 GLDFYVVLGRTGFNVAHRRRKTGKVGFPHRLTK 509 G+DFYVVL R G+ VA RRR +VG HR+TK Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQHRVTK 158 Score = 106 bits (254), Expect = 1e-23 Identities = 53/74 (71%), Positives = 61/74 (82%) Frame = +1 Query: 61 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 240 N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68 Query: 241 VHCTVEELKQKKSL 282 + TV K + L Sbjct: 69 CYVTVRGEKAMQLL 82 Score = 41.1 bits (92), Expect = 6e-04 Identities = 17/29 (58%), Positives = 21/29 (72%) Frame = +2 Query: 485 GISPPPHKEDAMKWFQQKYDGIILNSKQS 571 GI K+DAMKWFQ KY+G+ILN Q+ Sbjct: 151 GIQHRVTKDDAMKWFQVKYEGVILNKSQN 179 >At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribosomal protein L11, cytosolic, Arabidopsis thaliana, PIR:S49033 Length = 182 Score = 131 bits (316), Expect = 4e-31 Identities = 63/93 (67%), Positives = 71/93 (76%) Frame = +3 Query: 231 KDCCPLYSRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 410 K C + RG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIY Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125 Query: 411 GLDFYVVLGRTGFNVAHRRRKTGKVGFPHRLTK 509 G+DFYVVL R G+ VA RRR +VG HR+TK Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQHRVTK 158 Score = 106 bits (254), Expect = 1e-23 Identities = 53/74 (71%), Positives = 61/74 (82%) Frame = +1 Query: 61 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 240 N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68 Query: 241 VHCTVEELKQKKSL 282 + TV K + L Sbjct: 69 CYVTVRGEKAMQLL 82 Score = 41.1 bits (92), Expect = 6e-04 Identities = 17/29 (58%), Positives = 21/29 (72%) Frame = +2 Query: 485 GISPPPHKEDAMKWFQQKYDGIILNSKQS 571 GI K+DAMKWFQ KY+G+ILN Q+ Sbjct: 151 GIQHRVTKDDAMKWFQVKYEGVILNKSQN 179 >At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 665 Score = 36.7 bits (81), Expect = 0.012 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%) Frame = +3 Query: 273 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 437 E+LE+GLK EY + S +G G GI+ H +D GIK D +IG +D Y G Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342 >At4g01310.1 68417.m00171 ribosomal protein L5 family protein contains Pfam profiles PF00673: ribosomal L5P family C-terminus, PF00281: ribosomal protein L5 Length = 262 Score = 36.3 bits (80), Expect = 0.016 Identities = 17/68 (25%), Positives = 40/68 (58%), Gaps = 3/68 (4%) Frame = +1 Query: 61 NVMRNLHIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 231 N+ + ++K+ +N +G++ L A K + +TGQ+P+ ++AR ++ +F IR ++ Sbjct: 79 NIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQ 138 Query: 232 KIAVHCTV 255 + + T+ Sbjct: 139 PLGIAVTL 146 >At4g30990.1 68417.m04398 expressed protein ; expression supported by MPSS Length = 2138 Score = 29.5 bits (63), Expect = 1.9 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Frame = -1 Query: 246 MDSNLFIT-TDTKRPHCIPSLGKYRLLSCELLQHLGGTS----QPVTGFTNTDVQAKLSD 82 +DS+L I T R H S GKY+L+ L L GT+ +TG ++D++ LS Sbjct: 465 VDSSLLICFKKTLRQHLAVSDGKYQLMIHSFLHSLLGTTLRSCYKMTGINHSDLEEALSF 524 Query: 81 MK 76 K Sbjct: 525 AK 526 >At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 748 Score = 29.1 bits (62), Expect = 2.5 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +3 Query: 249 YSRGAKAEEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLGIKYDPSIGIYGLDFY 425 Y++ E+ +E L+ RE L+ D F+ G GF G + +DLG + + GL Sbjct: 123 YTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQ 182 Query: 426 VVL 434 V L Sbjct: 183 VFL 185 >At3g06210.1 68416.m00714 expressed protein contains Prosite PS00616: Histidine acid phosphatases phosphohistidine signature; Length = 840 Score = 29.1 bits (62), Expect = 2.5 Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Frame = +1 Query: 187 KARYTVRSFGIRRNEKIAVHCTVEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVF-- 360 +A +TV GI + ++ ++ L+ K + ++ G+ + R+ +F Sbjct: 140 QATWTVSGVGIS-SFRVLQSSSISLLRNLKRISDGIFKPILDNGLREATTRIGRQEIFDR 198 Query: 361 KNTLTWVSSTIPQLEFMDWTFTSYLAGQV 447 + TLTW +S +P L + W + S ++ Sbjct: 199 RTTLTWKNSEVPLLPYARWLYISSYVSRI 227 >At4g14280.1 68417.m02201 hypothetical protein Length = 798 Score = 27.9 bits (59), Expect = 5.7 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +1 Query: 367 TLTWVSSTIPQLEFMDWTFTS 429 T TW SS +P L + W F S Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187 >At3g55000.1 68416.m06104 tonneau family protein similar to tonneau 1b (GI:11494367) [Arabidopsis thaliana] Length = 260 Score = 27.5 bits (58), Expect = 7.5 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = +2 Query: 437 PDRFQRSTQKA*DRKSGISPPPHKEDAMKWFQQKYD 544 P R S +A DR++G+S +++D W Q D Sbjct: 183 PQRRPVSASQASDRRAGLSTSGYRKDEFNWRQGNQD 218 >At5g53430.1 68418.m06640 PHD finger family protein / SET domain-containing protein (TX5) contains Pfam domain, PF00628: PHD-finger and PF00856: SET domain; identical to cDNA trithorax 5 (TX5) partial cds GI:16118406 Length = 1043 Score = 27.1 bits (57), Expect = 10.0 Identities = 10/33 (30%), Positives = 16/33 (48%) Frame = -2 Query: 515 HLLCEAVGKSHFSCLTPSVCYVETCPAKYDVKV 417 H C+ + HF L + Y TC K+D ++ Sbjct: 442 HSACDQISHKHFKDLGETDYYCPTCRTKFDFEL 474 >At5g48500.1 68418.m05997 expressed protein similar to unknown protein (gb|AAD28645.1) Length = 167 Score = 27.1 bits (57), Expect = 10.0 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -2 Query: 269 CFSSSTVQWTAIFSLRRIPKDRTVYLA 189 CF ++T Q A P+DR +YLA Sbjct: 33 CFETATTQQPAFLHYASYPQDRDLYLA 59 >At5g48180.1 68418.m05952 kelch repeat-containing protein contains Pfam PF01344: Kelch motif (5 repeats) ;similar to Tip elongation aberrant protein 1 (Cell polarity protein tea1) (SP:P87061) [Schizosaccharomyces pombe] Length = 326 Score = 27.1 bits (57), Expect = 10.0 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = -2 Query: 284 LKDFFCFSSSTVQWTAIFSLRRIPKDRTVYLAL 186 L D CF ++ QW A+ + +P R+V+ A+ Sbjct: 196 LGDIHCFDLASEQWKAVETTGDVPAARSVFPAV 228 >At2g48100.2 68415.m06021 exonuclease family protein contains Pfam domain PF00929: exonuclease Length = 344 Score = 27.1 bits (57), Expect = 10.0 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +3 Query: 60 KCNAESSYQKALLEHLCW 113 K NAE YQK+ E+ CW Sbjct: 319 KMNAEELYQKSTSEYRCW 336 >At2g48100.1 68415.m06020 exonuclease family protein contains Pfam domain PF00929: exonuclease Length = 344 Score = 27.1 bits (57), Expect = 10.0 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +3 Query: 60 KCNAESSYQKALLEHLCW 113 K NAE YQK+ E+ CW Sbjct: 319 KMNAEELYQKSTSEYRCW 336 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,834,895 Number of Sequences: 28952 Number of extensions: 280068 Number of successful extensions: 785 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 756 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 784 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1246162608 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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