Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30665
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26100.2 68416.m03250 regulator of chromosome condensation (R...    28   4.1  
At3g26100.1 68416.m03251 regulator of chromosome condensation (R...    28   4.1  
At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containi...    27   5.4  
At3g52710.1 68416.m05807 expressed protein predicted protein, Ar...    27   9.5  
At1g44120.1 68414.m05096 C2 domain-containing protein / armadill...    27   9.5  

>At3g26100.2 68416.m03250 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 532

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 358 LSLGNVRCRRLESTLVSDVGHSVSNTVRADVRKF 257
           L  G   CRR +S  V+  GHSV+ T + +V  F
Sbjct: 134 LLAGEACCRREKSQAVAGPGHSVAVTSKGEVYTF 167


>At3g26100.1 68416.m03251 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 432

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 358 LSLGNVRCRRLESTLVSDVGHSVSNTVRADVRKF 257
           L  G   CRR +S  V+  GHSV+ T + +V  F
Sbjct: 34  LLAGEACCRREKSQAVAGPGHSVAVTSKGEVYTF 67


>At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 554

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 251 PREFAYIGPDGVTYAVTYVANEGGFQPSAPHIPKA 355
           PRE   +G  G +   ++VA   GF+PS P  P A
Sbjct: 409 PRES--LGASGSSSGNSFVAPRSGFEPSIPSAPPA 441


>At3g52710.1 68416.m05807 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 289

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 357 KSTEQAPASSPKILIHLKSFRLLLESKRSVIR 452
           K    AP S+P    +  S R+ L+SK S+IR
Sbjct: 74  KGNSSAPISNPNTNPNSSSHRISLKSKASIIR 105


>At1g44120.1 68414.m05096 C2 domain-containing protein /
            armadillo/beta-catenin repeat family protein similar to
            CCLS 65 [Silene latifolia] GI:2570102; contains Pfam
            profiles PF00514: Armadillo/beta-catenin-like repeat,
            PF00168: C2 domain
          Length = 2114

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 342  TFPRLKSTEQAPASSPKILIHLKS 413
            TFP+L+S+E A A  P ++  LKS
Sbjct: 1899 TFPKLRSSEAATACIPHLIGALKS 1922


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,188,626
Number of Sequences: 28952
Number of extensions: 137199
Number of successful extensions: 304
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)