Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30661
(304 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi... 89 5e-19
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi... 89 7e-19
At1g04030.1 68414.m00390 expressed protein 32 0.064
At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein, A... 32 0.085
At3g48200.1 68416.m05259 expressed protein 27 2.4
At5g56560.1 68418.m07058 F-box family protein contains F-box dom... 27 3.2
At4g37950.1 68417.m05365 expressed protein 27 3.2
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil... 26 4.2
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ... 26 4.2
At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containi... 26 4.2
At3g25950.1 68416.m03234 hypothetical protein 26 5.6
At5g50350.1 68418.m06236 expressed protein 25 7.4
At5g35550.1 68418.m04229 myb family transcription factor (MYB123... 25 7.4
At4g35940.1 68417.m05113 expressed protein 25 7.4
At3g17010.1 68416.m02172 transcriptional factor B3 family protei... 25 7.4
At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal hydrolase-r... 25 7.4
At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal hydrolase-r... 25 7.4
At5g47225.1 68418.m05823 hypothetical protein 25 9.7
At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)... 25 9.7
At1g14560.1 68414.m01731 mitochondrial substrate carrier family ... 25 9.7
>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
to 60S ribosomal protein L29 GB:P25886 from (Rattus
norvegicus)
Length = 83
Score = 89.0 bits (211), Expect = 5e-19
Identities = 38/53 (71%), Positives = 45/53 (84%)
Frame = +1
Query: 19 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 177
+MAKSKNHT HNQ+ KAH+NGIKKPR+ RH T GMDPKFLRNQR+ +K N+K
Sbjct: 22 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 74
>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
to ribosomal protein L29 GI:7959366 [Panax ginseng]
Length = 61
Score = 88.6 bits (210), Expect = 7e-19
Identities = 38/52 (73%), Positives = 44/52 (84%)
Frame = +1
Query: 22 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 177
MAKSKNHT HNQ+ KAH+NGIKKPR+ RH T GMDPKFLRNQR+ +K N+K
Sbjct: 1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVK 52
>At1g04030.1 68414.m00390 expressed protein
Length = 418
Score = 32.3 bits (70), Expect = 0.064
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 19 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPK 135
K AKSK T Q++K + N I + R S+ G DP+
Sbjct: 215 KSAKSKGRTKQKQSQKENSNFIADQEEKRDSSSFGTDPQ 253
>At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein,
Arabidopsis thaliana, AJ011845
Length = 400
Score = 31.9 bits (69), Expect = 0.085
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 34 KNHTNHNQNRKAHRNGIKKPRKTRHESTLG 123
KNHT H++ R ++ G K RKT +T G
Sbjct: 88 KNHTFHHKMRMSYSEGSKMKRKTHRNTTFG 117
>At3g48200.1 68416.m05259 expressed protein
Length = 1088
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 16 IKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLKP 180
I +A S H+ K H N I T ES G+ + + F + NLKP
Sbjct: 548 IMVATSPYIGPHSFISKTHNNMINLKTSTNAESVFGLPLTAMEYRLFFETSNLKP 602
>At5g56560.1 68418.m07058 F-box family protein contains F-box domain
Pfam:PF00646
Length = 607
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 169 YPSCKTFDSLKILDPCQGWIRAWSSL 92
YP+C F SLK L+ C R W++L
Sbjct: 475 YPACTVFSSLKYLELCTCSAR-WANL 499
>At4g37950.1 68417.m05365 expressed protein
Length = 678
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 14 SSKWQSQ-RIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQNF*GIKGFARRVT 172
+ WQ++ + Q T+ K+ M + + RPGT AW+ F G + R +T
Sbjct: 408 AGSWQTENKGYQFWTRADKMG-MFTIANVRPGTYSLYAWVSGFIGDYKYVRDIT 460
>At4g01925.1 68417.m00256 DC1 domain-containing protein low
similarity to UV-B light insensitive ULI3 [Arabidopsis
thaliana] GI:17225050; contains Pfam profile PF03107:
DC1 domain
Length = 399
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 82 YHFCELCGFGYDLYDSLTLP 23
YH CE CGF DLY ++ P
Sbjct: 65 YH-CETCGFDVDLYCAMYPP 83
>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 82 YHFCELCGFGYDLYDSLTLPF**VFNP 2
++ C +CGF DL +LTLP + NP
Sbjct: 182 FYRCLICGFCLDLSCALTLPPLTIANP 208
>At1g62720.1 68414.m07079 pentatricopeptide (PPR)
repeat-containing protein contains multiple PPR repeats
Pfam Profile: PF01535
Length = 426
Score = 26.2 bits (55), Expect = 4.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 82 YHFCELCGFGYDLY 41
+H E+CG G+DLY
Sbjct: 33 FHHMEVCGIGHDLY 46
>At3g25950.1 68416.m03234 hypothetical protein
Length = 251
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 123 AKGGFVPGLPWLFDTISVSFAVLVMICMIL 34
A G VP WL + + FA+LV I +L
Sbjct: 205 AADGVVPRWAWLSWLVVIGFAILVSILWVL 234
>At5g50350.1 68418.m06236 expressed protein
Length = 584
Score = 25.4 bits (53), Expect = 7.4
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +2
Query: 11 NSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQNF*GI----KGFARRVT*S 178
+SSK ++RII+ + K T +S G G + + G+ KG+A ++ S
Sbjct: 295 SSSKHGTERIIRTVYAQNKATPKKRESLGNSGYGSQRKSLDDNRGVSTSTKGYATKLQES 354
Query: 179 QPSNSRGRLREKLPEKQRPR 238
+ R L E + E+QR R
Sbjct: 355 E-ERKRELLAEIMLEEQRGR 373
>At5g35550.1 68418.m04229 myb family transcription factor (MYB123)
contains PFAM profile: myb DNA-binding domain PF00249
Length = 258
Score = 25.4 bits (53), Expect = 7.4
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +1
Query: 34 KNHTNHNQNRKAHRNGIKKPRKTRHES 114
KNH N N ++ + K+P++ +H +
Sbjct: 107 KNHWNSNLRKRLPKTQTKQPKRIKHST 133
>At4g35940.1 68417.m05113 expressed protein
Length = 451
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 161 RRVT*SQPSNSRGRLREKLPEKQRP 235
+R+ QP N R +EK EKQ+P
Sbjct: 230 KRIEKQQPLNGRHNNKEKQKEKQQP 254
>At3g17010.1 68416.m02172 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 302
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 28 KSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKF 138
K K + + +K RN +KK K++ + L P+F
Sbjct: 166 KKKTEDSKSSKKKMTRNKVKKKSKSKSKQVLDGVPEF 202
>At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1147
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 34 KNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPK 135
K+ +N +NR R + HES++ ++PK
Sbjct: 751 KSGSNKKKNRSNKRTSASMSKDDVHESSVNLEPK 784
>At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1121
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 34 KNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPK 135
K+ +N +NR R + HES++ ++PK
Sbjct: 751 KSGSNKKKNRSNKRTSASMSKDDVHESSVNLEPK 784
>At5g47225.1 68418.m05823 hypothetical protein
Length = 351
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 214 LFSQPPSRVAWLASGYPS 161
+F PP+R W SG PS
Sbjct: 87 IFECPPARQVWALSGIPS 104
>At5g16850.1 68418.m01974 telomerase reverse transcriptase (TERT)
identical to telomerase reverse transcriptase
[Arabidopsis thaliana] GI:5880683
Length = 1123
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 205 QPPSRVAWLASGYPSCKTFDSLKI 134
QPP++ WL+S C DS I
Sbjct: 201 QPPTKRQWLSSAVDDCPKDDSATI 224
>At1g14560.1 68414.m01731 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 331
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 154 TFDSLKILDPCQGWIRAWSSLAF*Y-HFCELCGFGYDLYDSL 32
TFD L + QGW + ++ L+ Y G+ +Y+S+
Sbjct: 275 TFDGLNTIVRTQGWKQLFAGLSINYIKIVPSVAIGFTVYESM 316
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,748,295
Number of Sequences: 28952
Number of extensions: 104847
Number of successful extensions: 330
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -