Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30660x
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   135   3e-33
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   135   3e-33
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    38   0.001
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.44 
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    27   1.8  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    26   4.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   5.4  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   7.1  
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    25   7.1  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   7.1  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   9.4  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  135 bits (327), Expect = 3e-33
 Identities = 67/92 (72%), Positives = 76/92 (82%)
 Frame = +1

Query: 256 SAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQV 435
           +AGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQV
Sbjct: 51  TAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQV 110

Query: 436 LVTAIINSGPREDSTRIGRAGTVRLKPLMFHP 531
           LV A+   GPREDSTRIG AGTVR + +   P
Sbjct: 111 LVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142



 Score = 31.1 bits (67), Expect = 0.11
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +2

Query: 95  AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISV 226
           A S++ + +SL +      IKLF ++    V+V D+SL DYI++
Sbjct: 2   AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITI 42


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  135 bits (327), Expect = 3e-33
 Identities = 67/92 (72%), Positives = 76/92 (82%)
 Frame = +1

Query: 256 SAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQV 435
           +AGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQV
Sbjct: 51  TAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQV 110

Query: 436 LVTAIINSGPREDSTRIGRAGTVRLKPLMFHP 531
           LV A+   GPREDSTRIG AGTVR + +   P
Sbjct: 111 LVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142



 Score = 28.7 bits (61), Expect = 0.58
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 116 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISV 226
           T SL     + E   IKLF ++    V+V D+SL DYI++
Sbjct: 3   TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITI 42


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 23/53 (43%), Positives = 28/53 (52%)
 Frame = +1

Query: 307 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 465
           V+ L N +M     +GKK  A +IV  A  II   TGENP+ VL  AI    P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 366 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 464
           G TYC  C     L+NW K S S   C  +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +2

Query: 131 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPLQ 259
           + ADI  +  FGR    ++++++  +   I+V+EKYAK  PL+
Sbjct: 7   KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLK 45


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 315 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 437
           PYK+   +  + W +  G+TY  + +  + L   R+ +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 134  AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPLQLAG 268
            + D+PEIK F   S  D  VS +  Q +  +  K  K   L+ AG
Sbjct: 2447 SVDLPEIKDFEHVSILDFDVS-LETQSWYPIAGKTLKSSALKYAG 2490


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 120 CLYHKPPTFLKSSFS 164
           C  H P TFL SSFS
Sbjct: 117 CFIHPPITFLSSSFS 131


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 247 FTSSAGRYAH-KRFRKAQCPIVERLTNSLM-MHGR 345
           F  + G +A  KRF  A CP+ E L+ S++ + GR
Sbjct: 101 FKQAMGNFAGVKRFGHAYCPLDEALSRSVVDLSGR 135


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 265 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIH 405
           +Y  KR   A+  +V R       H R N  KL +  +  H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 394  EIIHLLTGENPLQVLVTAIINSGPREDSTR 483
            EI  +LTGENP ++   AI+    R  + R
Sbjct: 1034 EIFLMLTGENPEELQADAIVPVNVRRVTNR 1063


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,918
Number of Sequences: 5004
Number of extensions: 46061
Number of successful extensions: 119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)