Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30660x
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 152 1e-37
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 151 3e-37
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 29 1.8
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 3.1
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 29 3.1
03_06_0610 + 35052455-35053429,35054936-35055511 29 3.1
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 28 4.1
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 7.2
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 27 7.2
05_03_0259 - 11161447-11161706,11161764-11164266 27 9.5
04_03_0621 - 18102243-18104249 27 9.5
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 152 bits (369), Expect = 1e-37
Identities = 72/92 (78%), Positives = 80/92 (86%)
Frame = +1
Query: 256 SAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQV 435
+AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV
Sbjct: 47 TAGRYSAKRFRKAQCPIVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQV 106
Query: 436 LVTAIINSGPREDSTRIGRAGTVRLKPLMFHP 531
+V AIINSGPRED+TRIG AG VR + + P
Sbjct: 107 IVDAIINSGPREDATRIGSAGAVRRQAVDISP 138
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/45 (53%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Frame = +2
Query: 149 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLPLQLAGMHTS 280
E+KLF RWS DVQV+D+SL DY++V K+A YLP AG +++
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLP-HTAGRYSA 53
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 151 bits (367), Expect = 3e-37
Identities = 71/92 (77%), Positives = 80/92 (86%)
Frame = +1
Query: 256 SAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQV 435
+AGRY+ KRFRKAQCP+VERLTNSLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV
Sbjct: 48 TAGRYSAKRFRKAQCPLVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQV 107
Query: 436 LVTAIINSGPREDSTRIGRAGTVRLKPLMFHP 531
+V AIINSGPRED+TRIG AG VR + + P
Sbjct: 108 IVDAIINSGPREDATRIGSAGAVRRQAVDISP 139
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +2
Query: 152 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPLQLAGMHTS 280
+KLF WS DVQV+D+SL DY++V K+A YLP AG +++
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLP-HTAGRYSA 54
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +2
Query: 83 DVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPL 256
++ G +VV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+PL
Sbjct: 215 EIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIPL 270
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 84 T*PRQAAWLWKPCLYHKPPTF 146
T P Q +WLW+ L H P F
Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 80 DDVAEAGSVVVETMSLPQAAD-IPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPL 256
DD + ++ E + + D I E +L W D V+ L+D I KE + + L
Sbjct: 197 DDPPQLSKLIPENSPVGKPQDEIAEERLEDNWVPPDETVAPEELEDTIRSKEAHTNAVIL 256
Query: 257 QLAGMHTSVSVKP 295
Q G +KP
Sbjct: 257 QSLGDIPDAEIKP 269
>03_06_0610 + 35052455-35053429,35054936-35055511
Length = 516
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -3
Query: 202 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWYFSITK 35
++ ++V TP A L F GGLW +G + AAC+ V++ V+ DW+ +
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWHLEALR 475
Query: 34 *K 29
K
Sbjct: 476 AK 477
>10_07_0091 -
12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 170 WSCYDVQVSDMSLQDYISVKEKYAKYLPLQLAGM-HTSVSVKPSAQSWSALQTL 328
W C + + +SLQ+++ + +Y L L+G+ H + V + L+TL
Sbjct: 134 WKCLKFENTRISLQNFVDICHRYQNVTYLNLSGVPHAELLVMEAITCLRHLKTL 187
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 307 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 417
+ L ++HG N ++++AV +K +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -3
Query: 238 VLLFNGNVVLQRHIRDLHIVATPSAEK 158
+++F+G++V+ + I+DLH T E+
Sbjct: 57 IVMFDGHIVVYKFIQDLHFFVTGGEEE 83
>05_03_0259 - 11161447-11161706,11161764-11164266
Length = 920
Score = 27.1 bits (57), Expect = 9.5
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +1
Query: 247 FTSSAGRYAHKRFRKAQCPIVERLTNSLMMHGR-NNGKKLMAVRIVKHAFEIIHLLTGEN 423
+T A R RK P V +T +L++ G +G+ A R+VK E ++ E
Sbjct: 268 WTEDARRILESLQRKGLSPNV--VTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEV 325
Query: 424 PLQVLVTAIINSGPREDSTRI 486
+++ G +D+TR+
Sbjct: 326 AYGMMINGYCQRGRMDDATRV 346
>04_03_0621 - 18102243-18104249
Length = 668
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 244 IFTSSAGRYAHKRFRKAQCPIVERL-TNSLMMHGRNNGKKLMAVRIVKH 387
+ T++AG+ K+ ++ + + T +++HG KKL++ I H
Sbjct: 357 VHTTTAGKQCEKKDKEPDIQSIPEVGTEEMLVHGSTEKKKLVSSTIEDH 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,518,917
Number of Sequences: 37544
Number of extensions: 302633
Number of successful extensions: 719
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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