Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30660x
(534 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0) 164 3e-41
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9) 32 0.34
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09) 29 3.2
SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42) 29 3.2
SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24) 28 5.5
SB_19029| Best HMM Match : DUF1613 (HMM E-Value=0.00095) 28 5.5
SB_56354| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19) 27 7.3
SB_53727| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_12833| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
Length = 272
Score = 164 bits (399), Expect = 3e-41
Identities = 77/92 (83%), Positives = 84/92 (91%)
Frame = +1
Query: 256 SAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQV 435
+AGRYA KRFRKAQCPIVER+TNS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPLQV
Sbjct: 120 TAGRYAAKRFRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQV 179
Query: 436 LVTAIINSGPREDSTRIGRAGTVRLKPLMFHP 531
LV AIINSGPREDSTRIGRAGTVR + + P
Sbjct: 180 LVNAIINSGPREDSTRIGRAGTVRRQAVDVSP 211
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/50 (60%), Positives = 39/50 (78%)
Frame = +2
Query: 104 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 253
VV + + A ++P+IKLFG+WS DVQVSD+SL DYI+VKEKY+ YLP
Sbjct: 69 VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLP 118
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +2
Query: 104 VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSL 208
VV + + A ++P+IKLFG+WS DVQVSD+SL
Sbjct: 6 VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40
>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
Length = 439
Score = 31.9 bits (69), Expect = 0.34
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 167 RWSCYDVQVSDMSLQDYISVKEKYAKYLPLQLAGMHTSVSVKPSAQ 304
RWSC Q + +++ Y+ KE ++ LP + +SV+ PS +
Sbjct: 59 RWSCVTYQAKNQAVECYLPGKEPGSRVLPTRQRTRQSSVTYIPSKE 104
>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
Length = 474
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Frame = -2
Query: 320 VRRSTIGH-------WALRKRLCAYLPAEEVNILRTSL*RKCSPAETYQRLAHRSNSICR 162
VRRS I H WAL + +P +E+ L L R+ S Y L H+ + +
Sbjct: 283 VRRSVIDHYLLSMPCWALPAKWFTKIPTKELYHLDVKLTRRQSHDRHYDSLVHKKEQVVK 342
Query: 161 KA*FQECRR 135
+C +
Sbjct: 343 HEWMPKCSK 351
>SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42)
Length = 603
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 324 VCKALHDWALGFTETLVCIPAS*RGKYFAYFSLTEM*SCRDISETC 187
VC+ H+W +G L+ P K F FS T+M SC ++ C
Sbjct: 307 VCRNRHNWDIG-ASMLLRYPLDQSNKSF--FSWTDMASCDQLATAC 349
>SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)
Length = 553
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 12 TVRGYNFYLVIEKYQSWPR--RTGMTT*PR 95
+V G NF++V++ + WP T TT P+
Sbjct: 242 SVHGVNFFVVVDAHSKWPEIIATSSTTAPK 271
>SB_19029| Best HMM Match : DUF1613 (HMM E-Value=0.00095)
Length = 301
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 241 KIFTSSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 378
++FTS+ Y +++ CP V+ L L++ R NG+ L+ RI
Sbjct: 179 QVFTSNHENYENQQGDGVVCPSVKWLREQLLIKIR-NGRSLLLARI 223
>SB_56354| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19)
Length = 340
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 144 FLKSSFSADGVATMCKSLICLCRTTFPLKRSTQNIYLFSWQVCTQAFP 287
F+ + SADG+ KS+ + P +S +L S Q C + P
Sbjct: 186 FMGDTISADGLKLSDKSVEAIVEAPAPTNQSEVRTFLGSAQFCAKFIP 233
>SB_53727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 309 HDWALGFTETLVCIPAS*RGKYFAYFSL 226
+ WA+ T++CIP S G FAYFS+
Sbjct: 179 YGWAIFMFITILCIPLSVMG--FAYFSI 204
>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1503
Score = 27.5 bits (58), Expect = 7.3
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +3
Query: 54 QSWPRRTGMTT*PRQAAWLWKPCLYHKPPTFLKSSFSADGVATMCKSLICLCRTTFPLKR 233
++WP T + T +A W W Y TFL ++ C ++ R T+P K
Sbjct: 706 EAWPEPTPLITSALRADWTWLGRRYGLATTFLI-------ISLWCLFILAKDRRTYPRKL 758
Query: 234 ST--QNIYLFSWQVCTQA 281
N+ L +C A
Sbjct: 759 HALFMNLLLLFVSICRAA 776
>SB_12833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +2
Query: 206 LQDYISVKEKYAKYLPLQLA-GMHTSVS 286
+QD+I++ +YA +LPL L G+ TSV+
Sbjct: 105 VQDFITICSQYADHLPLVLVFGVATSVA 132
>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/77 (20%), Positives = 33/77 (42%)
Frame = +2
Query: 41 NRKVPIMAEENWNDDVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYI 220
+R+ + E+ W+ ++ G + T P + +L WS V D ++ ++I
Sbjct: 619 DRQQRVRIEDEWSSQISPRGGIPQGTRLAPLLFAVLVNRLADEWSTRLKYVDDATVLEFI 678
Query: 221 SVKEKYAKYLPLQLAGM 271
YLP+ +G+
Sbjct: 679 --PRNSPSYLPIVASGI 693
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,174,130
Number of Sequences: 59808
Number of extensions: 362582
Number of successful extensions: 842
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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