Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30660x
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   155   1e-38
Z22181-13|CAA80184.3|  632|Caenorhabditis elegans Hypothetical p...    27   6.4  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  155 bits (377), Expect = 1e-38
 Identities = 74/89 (83%), Positives = 79/89 (88%)
 Frame = +1

Query: 241 KIFTSSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGE 420
           K    SAGR+  +RFRKA CPIVERL NSLMMHGRNNGKKLM VRIVKHAFEII+LLTGE
Sbjct: 53  KYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGE 112

Query: 421 NPLQVLVTAIINSGPREDSTRIGRAGTVR 507
           NP+QVLV A+INSGPREDSTRIGRAGTVR
Sbjct: 113 NPVQVLVNAVINSGPREDSTRIGRAGTVR 141



 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 26/40 (65%), Positives = 30/40 (75%)
 Frame = +2

Query: 134 AADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 253
           A + PE+ LFG+WS   V VSD+SL DYI VKEK AKYLP
Sbjct: 17  ATEAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLP 56


>Z22181-13|CAA80184.3|  632|Caenorhabditis elegans Hypothetical
           protein ZK632.7 protein.
          Length = 632

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 146 PEIK--LFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPLQLAGMHTSVSVK 292
           PEI+  L  R   YD +     + D     E ++  +PL++AG+ +  + K
Sbjct: 207 PEIRMELINRQLAYDTKADSAIIGDIPHSVEHFSNLVPLEIAGIQSQTTYK 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,493,418
Number of Sequences: 27780
Number of extensions: 264615
Number of successful extensions: 613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)