Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30660x
         (534 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...   149   9e-37
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...   149   9e-37
At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...   149   9e-37
At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family prote...    27   5.9  
At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOA...    27   5.9  
At3g10960.1 68416.m01321 xanthine/uracil permease family protein...    27   7.9  
At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2...    27   7.9  

>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  149 bits (362), Expect = 9e-37
 Identities = 70/92 (76%), Positives = 80/92 (86%)
 Frame = +1

Query: 256 SAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQV 435
           +AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV
Sbjct: 55  TAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQV 114

Query: 436 LVTAIINSGPREDSTRIGRAGTVRLKPLMFHP 531
           ++ AI+NSGPRED+TRIG AG VR + +   P
Sbjct: 115 IIDAIVNSGPREDATRIGSAGVVRRQAVDISP 146



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +2

Query: 131 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLP 253
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++P
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVP 53


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  149 bits (362), Expect = 9e-37
 Identities = 70/92 (76%), Positives = 80/92 (86%)
 Frame = +1

Query: 256 SAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQV 435
           +AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV
Sbjct: 55  TAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQV 114

Query: 436 LVTAIINSGPREDSTRIGRAGTVRLKPLMFHP 531
           ++ AI+NSGPRED+TRIG AG VR + +   P
Sbjct: 115 IIDAIVNSGPREDATRIGSAGVVRRQAVDISP 146



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +2

Query: 131 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLP 253
           Q A   E+KLF RW+  DV V+D+SL DYI V+  K+A ++P
Sbjct: 12  QQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVP 53


>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score =  149 bits (362), Expect = 9e-37
 Identities = 70/92 (76%), Positives = 80/92 (86%)
 Frame = +1

Query: 256 SAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQV 435
           +AGRY+ KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHA EIIHLL+  NP+QV
Sbjct: 55  TAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQV 114

Query: 436 LVTAIINSGPREDSTRIGRAGTVRLKPLMFHP 531
           ++ AI+NSGPRED+TRIG AG VR + +   P
Sbjct: 115 IIDAIVNSGPREDATRIGSAGVVRRQAVDISP 146



 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = +2

Query: 149 EIKLFGRWSCYDVQVSDMSLQDYISVK-EKYAKYLP 253
           E+KLF RWS  DV V+D+SL DYI V+  K+A ++P
Sbjct: 18  EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVP 53


>At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family protein
           low similarity to SP|P24640|LIP3_MORSP Lipase 3
           precursor (EC 3.1.1.3) (Triacylglycerol lipase)
           {Moraxella sp}; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 328

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 126 YHKPPTFLKSSFSADGVATMCKSLI 200
           ++KPP ++ S F+ D +  MCK  +
Sbjct: 191 FYKPPIWIPSCFAMDYIHVMCKDYL 215


>At1g57600.1 68414.m06536 membrane bound O-acyl transferase (MBOAT)
           family protein low similarity to skinny hedgehog
           [Drosophila melanogaster] GI:15420842; contains Pfam
           profile PF03062: MBOAT family
          Length = 533

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 102 AWLWKPCLYHKPPTFLKSSFSA 167
           +W W  CL+  P   LKS+ SA
Sbjct: 426 SWAWLTCLFFMPEMLLKSASSA 447


>At3g10960.1 68416.m01321 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 579

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 199 YVSAGLHFR*REVRKIFTSSAGRYAHKRFRK-AQCPIVERLTNSLMMHGRNNG 354
           +V+A   FR  EV     +SAG  AH  F+K     +++    +L   G N G
Sbjct: 325 FVTAVSWFRNTEVTAFPNTSAGDAAHDYFKKIVDVHVIKHTAGALSFSGINKG 377


>At1g79400.1 68414.m09253 cation/proton exchanger, putative (CHX2)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 783

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 461 PELIMAVTSTCRGFSPVNK*IISNACLTIRTAISFLPLFRPC 336
           P+L++ +      F+P+N   I  AC+ + + + +L L +PC
Sbjct: 3   PKLLLCLPQGDELFNPLNTMFIQMACILVFSQLFYL-LLKPC 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,709,883
Number of Sequences: 28952
Number of extensions: 244973
Number of successful extensions: 550
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)