Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30659x
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00950.1 68417.m00128 expressed protein                             27   9.3  
At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.3  

>At4g00950.1 68417.m00128 expressed protein
          Length = 291

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 246 LQLKMIPTLIKC*SKSMSNAFHTDFGKSVPF 154
           ++L ++PT     S SMS+  H+    SVPF
Sbjct: 16  MKLPVLPTKPNTHSHSMSSPIHSSISASVPF 46


>At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 208 IKINVKCISYRLWKVSPVLLCNKLSPSK 125
           +K   K  + ++W + PV LCNK    K
Sbjct: 237 VKDYTKARAGKVWSIGPVSLCNKAGADK 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,728,784
Number of Sequences: 28952
Number of extensions: 130768
Number of successful extensions: 180
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)