Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30657x
         (431 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   2.2  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           20   8.8  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    20   8.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 162 SWIVQFEGPQEITRVLELFSNSE 230
           SW+  F+G   ITR +  +  S+
Sbjct: 915 SWVAPFDGNSPITRYMIEYKQSK 937


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +2

Query: 104 RGYQSLPRRHNEWSSCANHQLDCSI*RATGNYSRT 208
           RGY+   R        A  Q D     ATG Y  T
Sbjct: 204 RGYEDFRRDFLRTYWSAKRQRDIRFQIATGRYDET 238


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 324 LSLANPRLYTNSRALF 371
           LS A PRL  N+R +F
Sbjct: 87  LSSAFPRLKRNARTIF 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,188
Number of Sequences: 336
Number of extensions: 2228
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)