Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30657x
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    91   5e-20
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    91   9e-20
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    77   2e-15
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    30   0.17 
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    28   0.70 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   1.2  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   2.8  
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    25   3.8  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   3.8  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    25   5.0  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    25   6.6  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   6.6  
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    24   8.7  

>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 91.5 bits (217), Expect = 5e-20
 Identities = 38/63 (60%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
 Frame = -1

Query: 254 VEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNREDKINDLLR 78
           VEDLIHEI+TVG  FK A+NFLWPFKL++P GGWR +K  H+++GGD G R++ IN L++
Sbjct: 188 VEDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQ 247

Query: 77  RMV 69
           +M+
Sbjct: 248 KML 250



 Score = 71.3 bits (167), Expect = 6e-14
 Identities = 29/58 (50%), Positives = 44/58 (75%)
 Frame = -2

Query: 430 ATVNMLRIAEPYIAWGYPNLKSARELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 257
           A   ML++ EPY+ +G PN K+ REL+YKRGF K++ QRIP++ N+I+E  L K++I+
Sbjct: 129 AIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSIL 186


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 90.6 bits (215), Expect = 9e-20
 Identities = 36/63 (57%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
 Frame = -1

Query: 254 VEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNREDKINDLLR 78
           +EDLIHEI+TVG  FK A+NF+WPF+L++P GGWR +K  H+++GGD G R++ IN L+R
Sbjct: 189 IEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRDEHINSLVR 248

Query: 77  RMV 69
           +M+
Sbjct: 249 KML 251



 Score = 72.5 bits (170), Expect = 3e-14
 Identities = 30/58 (51%), Positives = 45/58 (77%)
 Frame = -2

Query: 430 ATVNMLRIAEPYIAWGYPNLKSARELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 257
           AT  ML++ EPY+ +G PNLK+ REL+YKRGF K++ QRI ++ N+I+E  L K++I+
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSIL 187


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 76.6 bits (180), Expect = 2e-15
 Identities = 31/58 (53%), Positives = 45/58 (77%)
 Frame = -2

Query: 430 ATVNMLRIAEPYIAWGYPNLKSARELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 257
           A   MLRI EPY+ +G PNL S REL+YKRGF K++GQRI ++ N+++E+ L K+++I
Sbjct: 128 AVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVI 185



 Score = 53.6 bits (123), Expect = 1e-08
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = -1

Query: 254 VEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG-WRKKTIHYVDGGDFGNREDKINDLLR 78
           +ED+IHEI+ VG  FK  + FLWPF L         KK  H+ +G   G   ++IN+L++
Sbjct: 187 IEDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINELIK 246

Query: 77  RMV 69
           + V
Sbjct: 247 KQV 249


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 29.9 bits (64), Expect = 0.17
 Identities = 20/88 (22%), Positives = 42/88 (47%)
 Frame = +3

Query: 51   YKSIYLNHPPEKIVDLVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 230
            +  ++  HP   +      + K+  + I++  L       VQ +   E+ ++  LF NSE
Sbjct: 1732 FYEVFFQHPSTNVYANDEGI-KIGALQIISFFLKNVPEITVQHQ--TEMLKMCSLFGNSE 1788

Query: 231  DLMDEVLNQIMLCLWSLFSTMLLEVIGI 314
            D+M + L+  ++ L+ L S    E++ +
Sbjct: 1789 DVMIKQLSIYVMSLFILRSQFPYELVNV 1816


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 135 MNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 230
           MNGL  P   W +   GP  + R++  F   E
Sbjct: 75  MNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKE 106


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
 Frame = +3

Query: 135 MNGLLAPTTSWIVQFEGPQEIT----RVLELFSNS------EDLMDEVLNQIMLCLWS 278
           MN L+ P    IV  +GP EI     R+ EL  ++      + L+D ++  +++CLW+
Sbjct: 835 MNFLMKPL---IVALKGPPEIASQGLRIFELCLDNLTQEFLDPLLDSIMPDLLICLWN 889


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 251 QPDNVVFMEPLLNNAVGSDWYTLSTQLGESTFVY 352
           QP++     P  N    SD+YT S +  E TF +
Sbjct: 321 QPEDAPSESPYSNKVSSSDFYTRSFEEIEKTFTF 354


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +3

Query: 168 IVQFEGPQEITRVLELFSNSEDLMDEVLNQI-MLCLWSLFSTMLL--EVIGIRCPLSLAN 338
           ++ F     I   L LFS  +D+M+  LN       + L  T+ +  +++G R PLSL +
Sbjct: 75  LLNFTQKNPILASLFLFSTDKDIMNSSLNPASQAYTFDLGRTLPISEDILGYRKPLSLTD 134


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 421 NMLRIAEPYI--AWGYPNLKSARELVYKRGFAKLSGQRIPITSNSI 290
           N  +I+ PY     GYP +K  + L YK    KLS   +PI +  I
Sbjct: 35  NSTKISPPYSENVEGYPKVKIEKSLPYKYDNCKLS-ICVPIVTTCI 79


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 159 WLAQEDHSLCRRGRLW*PRRQDQRSSQED 73
           WL ++ H+   + +LW   R+DQ S  +D
Sbjct: 31  WLIKKGHATSTKKQLWAVLRRDQLSFYKD 59


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 294 LLEVIGIRCPLSLANPRLYTNSRALFKLG 380
           +L  I +   +S AN +LY  SRA+  LG
Sbjct: 362 ILNAIILISVISSANAQLYAGSRAIHSLG 390


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +3

Query: 168  IVQFEGPQEITRVLE-LFSNSEDLMDEVLNQIMLCLWSLFSTMLLEVIG--IRCPLSLAN 338
            IV+    +E+   ++ LFSN+ +L  E +          F   L+EV    I C L L+N
Sbjct: 1137 IVREYSSREVVMAVDMLFSNTRNLGSEGIYD--------FVKALIEVSWEEIECSLELSN 1188

Query: 339  PRLYTNSRALFKLGY 383
            PRL++  + L ++ Y
Sbjct: 1189 PRLFSLQK-LVEISY 1202


>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 257 LVE-DLIHEIFTVGEKFKYASNFLWPFK 177
           LVE +L H++  +    K+AS F  PF+
Sbjct: 182 LVELELSHKVCVISYSAKFASGFFGPFR 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,743,451
Number of Sequences: 5004
Number of extensions: 36404
Number of successful extensions: 103
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)