Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30657x
(431 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 97 4e-21
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 95 2e-20
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 63 8e-11
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 29 1.2
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 3.7
02_05_0303 + 27717097-27717149,27717515-27717635,27717746-277180... 27 6.5
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 97.5 bits (232), Expect = 4e-21
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = -1
Query: 254 VEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRR 75
+EDL+HEI TVG FK A+NFLWPFKL P GG +KK HYV+GGD GNRED IN+L+RR
Sbjct: 184 IEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRR 243
Query: 74 M 72
M
Sbjct: 244 M 244
Score = 88.6 bits (210), Expect = 2e-18
Identities = 37/58 (63%), Positives = 49/58 (84%)
Frame = -2
Query: 430 ATVNMLRIAEPYIAWGYPNLKSARELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 257
AT+NMLR EPY+A+GYPNLKS REL+YKRG+ KL+ QRIP+ +N ++E+ L KH+II
Sbjct: 125 ATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDII 182
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 95.5 bits (227), Expect = 2e-20
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -1
Query: 254 VEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRR 75
+EDL+HEI TVG FK A+NFLWPFKL P GG +KK HYV+GGD GNRE+ IN+L+RR
Sbjct: 189 IEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRR 248
Query: 74 M 72
M
Sbjct: 249 M 249
Score = 83.0 bits (196), Expect = 9e-17
Identities = 38/64 (59%), Positives = 50/64 (78%), Gaps = 6/64 (9%)
Frame = -2
Query: 430 ATVNMLRIAEPYIAWGYPNLKSARELVYKRGFAKLSGQRIPITSNSIVEKR------LHK 269
AT+NMLR EPY+A+GYPNLKS REL+YKRG+ KL+ QRIP+T+N ++E+ L K
Sbjct: 124 ATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGK 183
Query: 268 HNII 257
H+II
Sbjct: 184 HDII 187
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 63.3 bits (147), Expect = 8e-11
Identities = 26/60 (43%), Positives = 42/60 (70%)
Frame = -2
Query: 430 ATVNMLRIAEPYIAWGYPNLKSARELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIIWL 251
AT+ L + EP+I +G+PNLK+ ++L+YK+G L + P+TSN ++EK L ++ II L
Sbjct: 127 ATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICL 186
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/46 (47%), Positives = 29/46 (63%)
Frame = -1
Query: 254 VEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGD 117
+EDL+HEI +VG F+ ASNFL PFKL P + K + DG +
Sbjct: 186 LEDLVHEIASVGPHFREASNFLMPFKLKCPERRLQMKKKPFKDGAE 231
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 29.5 bits (63), Expect = 1.2
Identities = 17/72 (23%), Positives = 36/72 (50%)
Frame = +3
Query: 96 LVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNQIMLCLW 275
+V A +++ + + L+ + W+ G ++LEL N+E + D+VL Q + +
Sbjct: 1112 IVSASSRILDGECTSSALSYSLGWLSPPSGSVIAAQLLELGKNNEIVTDQVLRQELALVM 1171
Query: 276 SLFSTMLLEVIG 311
++L +IG
Sbjct: 1172 PKIYSLLSNLIG 1183
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 3.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 398 LHCLGIPQLKECP*VSIQTWIRQAEW 321
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
>02_05_0303 +
27717097-27717149,27717515-27717635,27717746-27718057,
27718172-27718276,27718367-27718821,27718964-27719094,
27719215-27719268,27719378-27719747,27719848-27719981,
27720081-27720319
Length = 657
Score = 27.1 bits (57), Expect = 6.5
Identities = 24/86 (27%), Positives = 41/86 (47%)
Frame = +3
Query: 48 NYKSIYLNHPPEKIVDLVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNS 227
N+ SIY +HP + D + + ++ L T+ ++QF G + ++ S S
Sbjct: 184 NFPSIY-DHPSITLKDPI-----IEQINHSVQKLTHATN-LLQFIGQHALIIPEDMHSGS 236
Query: 228 EDLMDEVLNQIMLCLWSLFSTMLLEV 305
EDL+D+ M L +L +T L V
Sbjct: 237 EDLVDDQSYHFMSLLLNLANTFLYMV 262
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,454,344
Number of Sequences: 37544
Number of extensions: 236282
Number of successful extensions: 569
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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