Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30657x
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      108   2e-24
SB_43177| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 28   3.8  
SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)                   28   3.8  
SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)                 27   8.7  
SB_19492| Best HMM Match : Ank (HMM E-Value=1.5e-05)                   27   8.7  
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  
SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  108 bits (259), Expect = 2e-24
 Identities = 48/61 (78%), Positives = 54/61 (88%)
 Frame = -1

Query: 254 VEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRR 75
           VEDLIHEIFTVGE FK ASNFLWPFKL++P GG+RKKT H+V+GGD GNREDKIN L+R 
Sbjct: 184 VEDLIHEIFTVGEHFKEASNFLWPFKLSSPKGGFRKKTTHFVEGGDHGNREDKINGLVRV 243

Query: 74  M 72
           M
Sbjct: 244 M 244



 Score = 89.0 bits (211), Expect = 1e-18
 Identities = 40/58 (68%), Positives = 47/58 (81%)
 Frame = -2

Query: 430 ATVNMLRIAEPYIAWGYPNLKSARELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 257
           AT NMLRI +PYIA+GYPNLKS REL+YKRG+ K+  QR+ +T NSIVEK L KH II
Sbjct: 125 ATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGII 182


>SB_43177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 54  KSIYLNHPPEKIVDLVFAVTKVSPVDIMNG 143
           K IYL HP   +VD+  AV   + VDI +G
Sbjct: 13  KQIYLYHPTPNLVDVSKAVFMGAAVDIRSG 42


>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 475

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 263 HYLVEDLIHEIFTVGEKFKYASNFLWPFKLNNP 165
           +Y +ED I EI   GEK K+    +WP +   P
Sbjct: 42  NYYIEDTILEIDFDGEKSKHCMLQVWPVRQMRP 74


>SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 242 IHEIFTVGEKFKYASNFLWPFKLNN 168
           ++ + T   KF YA++ LW F  NN
Sbjct: 58  LNRVITTTGKFSYATDDLWQFSCNN 82


>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
          Length = 528

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 242 IHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKT 141
           + E+ TV E F+   NFL  FK+  P     KKT
Sbjct: 351 LSEMITVEEAFQMCENFLEKFKIFFPLDAPNKKT 384


>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
          Length = 1450

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 154 GARRPFIMSTGETLV--TAKTRSTIFSG 77
           G RRPFI++  ETL+    +T ST  SG
Sbjct: 137 GLRRPFIINNEETLMHYATETESTCSSG 164


>SB_19492| Best HMM Match : Ank (HMM E-Value=1.5e-05)
          Length = 559

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +3

Query: 207 LELFSNSEDLMDE----VLNQIMLCLW 275
           LEL   +++L DE     LN+ MLCLW
Sbjct: 443 LELLEEAKNLADEEDISALNKTMLCLW 469


>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 154 GARRPFIMSTGETLV--TAKTRSTIFSG 77
           G RRPFI++  ETL+    +T ST  SG
Sbjct: 618 GLRRPFIINNEETLMHYATETESTCSSG 645


>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +3

Query: 207  LELFSNSEDLMDE----VLNQIMLCLW 275
            LEL   +++L DE     LN+ MLCLW
Sbjct: 1891 LELLEEAKNLADEEDISALNKTMLCLW 1917


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,939,197
Number of Sequences: 59808
Number of extensions: 268396
Number of successful extensions: 707
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)