Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30657x
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   112   1e-25
AL023816-4|CAA19433.2|  344|Caenorhabditis elegans Hypothetical ...    29   1.4  
AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical ...    29   1.4  
AF016445-1|AAC69057.2|  367|Caenorhabditis elegans Serpentine re...    27   5.8  
AF125964-9|AAD14749.2|  523|Caenorhabditis elegans Glutamate tra...    27   7.7  
AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  112 bits (269), Expect = 1e-25
 Identities = 48/62 (77%), Positives = 55/62 (88%)
 Frame = -1

Query: 254 VEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRR 75
           +EDL HEI TVG  FK A+NFLWPFKLNNPTGGW KKT H+V+GGDFGNRED+IN+LLR+
Sbjct: 183 LEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRK 242

Query: 74  MV 69
           MV
Sbjct: 243 MV 244



 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 37/60 (61%), Positives = 48/60 (80%)
 Frame = -2

Query: 430 ATVNMLRIAEPYIAWGYPNLKSARELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIIWL 251
           AT+ +LRI EPY+AWGYPN K+  +L+YKRG+AK+ G R+PIT N+IVE+ L K NII L
Sbjct: 124 ATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICL 183


>AL023816-4|CAA19433.2|  344|Caenorhabditis elegans Hypothetical
           protein T05G11.6 protein.
          Length = 344

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +3

Query: 186 PQEITRVLELFSNSEDLMDEVLNQIM--LCLWSLFSTMLLEVIGIRCPLS 329
           P E       F+ S +L   +L++I   L +W + +  +L +I I+CPLS
Sbjct: 86  PSECIPPYSYFTVSMELGFSILSKISGKLVVWIVVAMSILRLIAIKCPLS 135


>AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical
           protein Y73C8C.8 protein.
          Length = 946

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 54  KSIYLNHPPEKIVDLVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELF 218
           K +  N+ PE+++ L +  T  +PV  +  L+  +   +V +   +EI   L LF
Sbjct: 17  KKLVCNYIPEELLPLEWDCTDKNPVKNIQNLIDSSNGKLVVYGSAEEIFESLNLF 71


>AF016445-1|AAC69057.2|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein132 protein.
          Length = 367

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 273 WSLFSTMLLEVIGIRCPLSLANPRLYTNSRALFKL 377
           W LFS + +  + IR P+S  N +L +NS A F +
Sbjct: 130 WLLFSIVTIRTLVIRNPMSHKNEKL-SNSSASFSV 163


>AF125964-9|AAD14749.2|  523|Caenorhabditis elegans Glutamate
           transporter family protein7 protein.
          Length = 523

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 57  SIYLNHPPEKIVDLVFAVTKVSPVDIMNGLLAP 155
           S++L H    +  L F +TK SP+D+  G++ P
Sbjct: 270 SLFL-HCVIAVPTLYFFITKKSPIDVAKGMVQP 301


>AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical
           protein F02E11.1 protein.
          Length = 567

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 108 VTKVSPVDIMNGLLAPTTSWIVQFEGPQEITR 203
           + K+S  D++N L A TT +    +GP  +TR
Sbjct: 499 IDKISGCDLINPLNATTTGYCPASDGPGILTR 530


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,552,729
Number of Sequences: 27780
Number of extensions: 202134
Number of successful extensions: 499
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)