Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30657x
(431 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 94 3e-20
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 94 3e-20
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 94 3e-20
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 94 4e-20
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 94 4e-20
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 93 1e-19
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 65 2e-11
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 30 0.59
At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 1.0
At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein beta-1,... 29 1.0
At5g58310.1 68418.m07299 hydrolase, alpha/beta fold family prote... 27 5.5
At1g24650.1 68414.m03102 leucine-rich repeat family protein / pr... 27 5.5
At5g50320.1 68418.m06232 radical SAM domain-containing protein /... 27 7.2
At3g56100.1 68416.m06235 leucine-rich repeat transmembrane prote... 27 7.2
At3g27900.1 68416.m03481 hypothetical protein 27 7.2
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 94.3 bits (224), Expect = 3e-20
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = -1
Query: 254 VEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRR 75
VEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+RR
Sbjct: 183 VEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRR 242
Query: 74 M 72
M
Sbjct: 243 M 243
Score = 84.6 bits (200), Expect = 3e-17
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = -2
Query: 430 ATVNMLRIAEPYIAWGYPNLKSARELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 257
AT+NMLR EPY+ +GYPNLKS +EL+YKRGF KL+ QR +T NSIV++ L KH II
Sbjct: 124 ATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGII 181
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 94.3 bits (224), Expect = 3e-20
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = -1
Query: 254 VEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRR 75
VEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+RR
Sbjct: 183 VEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRR 242
Query: 74 M 72
M
Sbjct: 243 M 243
Score = 84.6 bits (200), Expect = 3e-17
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = -2
Query: 430 ATVNMLRIAEPYIAWGYPNLKSARELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 257
AT+NMLR EPY+ +GYPNLKS +EL+YKRGF KL+ QR +T NSIV++ L KH II
Sbjct: 124 ATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGII 181
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 94.3 bits (224), Expect = 3e-20
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = -1
Query: 254 VEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRR 75
VEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+RR
Sbjct: 183 VEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRR 242
Query: 74 M 72
M
Sbjct: 243 M 243
Score = 84.6 bits (200), Expect = 3e-17
Identities = 37/58 (63%), Positives = 46/58 (79%)
Frame = -2
Query: 430 ATVNMLRIAEPYIAWGYPNLKSARELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 257
AT+NMLR EPY+ +GYPNLKS +EL+YKRGF KL+ QR +T NSIV++ L KH II
Sbjct: 124 ATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGII 181
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 93.9 bits (223), Expect = 4e-20
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = -1
Query: 254 VEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRR 75
VEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+RR
Sbjct: 186 VEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRR 245
Query: 74 M 72
M
Sbjct: 246 M 246
Score = 86.2 bits (204), Expect = 8e-18
Identities = 38/58 (65%), Positives = 47/58 (81%)
Frame = -2
Query: 430 ATVNMLRIAEPYIAWGYPNLKSARELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 257
ATVNMLR EPY+ +GYPNLKS +EL+YKRG+ KL+ QRI +T NSIV++ L KH II
Sbjct: 127 ATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGII 184
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 93.9 bits (223), Expect = 4e-20
Identities = 42/61 (68%), Positives = 49/61 (80%)
Frame = -1
Query: 254 VEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRR 75
VEDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+RR
Sbjct: 181 VEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRR 240
Query: 74 M 72
M
Sbjct: 241 M 241
Score = 86.2 bits (204), Expect = 8e-18
Identities = 38/58 (65%), Positives = 47/58 (81%)
Frame = -2
Query: 430 ATVNMLRIAEPYIAWGYPNLKSARELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 257
ATVNMLR EPY+ +GYPNLKS +EL+YKRG+ KL+ QRI +T NSIV++ L KH II
Sbjct: 122 ATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGII 179
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 92.7 bits (220), Expect = 1e-19
Identities = 41/60 (68%), Positives = 48/60 (80%)
Frame = -1
Query: 251 EDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 72
EDLIHEI TVG FK A+NFLWPF+L P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 182 EDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRM 241
Score = 84.6 bits (200), Expect = 3e-17
Identities = 37/58 (63%), Positives = 47/58 (81%)
Frame = -2
Query: 430 ATVNMLRIAEPYIAWGYPNLKSARELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 257
AT+NMLR EPY+ +G+PNLKS +EL+YKRG+ KL+ QRI +T NSIVE+ L KH II
Sbjct: 122 ATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGII 179
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 64.9 bits (151), Expect = 2e-11
Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Frame = -1
Query: 254 VEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGG--WRKKTIHYVDGGDFGNREDKINDLL 81
+EDL++EI VG+ F+ FL P KLN P RKK + + +GGD GNREDKINDL+
Sbjct: 185 IEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQV-FSEGGDTGNREDKINDLI 243
Query: 80 RRM 72
+M
Sbjct: 244 SKM 246
Score = 59.3 bits (137), Expect = 1e-09
Identities = 21/49 (42%), Positives = 36/49 (73%)
Frame = -2
Query: 403 EPYIAWGYPNLKSARELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 257
+PY+ +GYPN KS ++L+YK+G + G +P+T N+I+E+ L +H I+
Sbjct: 135 QPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKIL 183
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 30.3 bits (65), Expect = 0.59
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +3
Query: 78 PEKIVDLVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNQ 257
P+ + LV A ++ + + LA W+ G ++LEL N+E L+D+VL Q
Sbjct: 1102 PKTDMWLVSASMRILDGECSSTALAYNLGWLSHPGGSAIAAQLLELGKNNEILIDQVLRQ 1161
Query: 258 IMLCLWSLFSTMLLEVIG 311
+ ++L ++G
Sbjct: 1162 ELALAMPKIYSILARLLG 1179
>At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 1.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 209 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 114
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 29.5 bits (63), Expect = 1.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 209 KYASNFLWPFKLNNPTGGWRKKTIHYVDGGDF 114
++ S +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At5g58310.1 68418.m07299 hydrolase, alpha/beta fold family protein
low similarity to SP|Q40708 PIR7A protein {Oryza
sativa}, polyneuridine aldehyde esterase [Rauvolfia
serpentina] GI:6651393, ethylene-induced esterase
[Citrus sinensis] GI:14279437; contains Pfam profile
PF00561: hydrolase, alpha/beta fold family
Length = 263
Score = 27.1 bits (57), Expect = 5.5
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Frame = +3
Query: 78 PEKIVDLVFAVTKVSPVDIMNGLL--APTTSWI--VQFEGPQEITRVLELF--SNSEDLM 239
PE + D + + + + LL AP ++I + G E ++ ++ + + L
Sbjct: 156 PEYVRDKFYNESPMEDYTLATTLLRPAPVMAFIGIMDIPGAPETDKIPRVYVKTGKDHLF 215
Query: 240 DEVLNQIMLCLWSLFSTMLL 299
+ VL ++ML LW T LL
Sbjct: 216 EPVLQEVMLALWPPAHTFLL 235
>At1g24650.1 68414.m03102 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 886
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 242 IHEIFTVGEKFKYASNFLWPFKLNNPTGGW 153
++ + ++ E F Y NF +K N+P GW
Sbjct: 327 VNTLLSIVEAFGYPVNFAEKWKGNDPCSGW 356
>At5g50320.1 68418.m06232 radical SAM domain-containing protein /
GCN5-related N-acetyltransferase (GNAT) family protein
contains Pfam profiles PF00583: acetyltransferase, GNAT
family, PF04055: Radical SAM superfamily
Length = 565
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 63 YLNHPPEKIVDLVFAVTKVSP 125
Y N+PPE++VD+V + + P
Sbjct: 355 YRNYPPEQLVDIVARILSMVP 375
>At3g56100.1 68416.m06235 leucine-rich repeat transmembrane protein
kinase, putative hypothetical proteins - Arabidopsis
thaliana
Length = 719
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 108 VTKVSPVDIMNGLLAPT-TSWIVQFEGPQEITRVLELFSNSEDLMDEVLNQIMLCLWSLF 284
+T SP + +NG+ P + V+ E E+ LEL ++ + DE+LN + L L +
Sbjct: 617 LTGKSPSEALNGVDLPQWVATAVKEEWTNEVFD-LELLNDVNTMGDEILNTLKLALHCVD 675
Query: 285 ST 290
+T
Sbjct: 676 AT 677
>At3g27900.1 68416.m03481 hypothetical protein
Length = 244
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 189 QEITRVLELFSNSEDLMDEVLNQIMLCLW-SLFSTMLLEVIGIR 317
+E R + S + EV+ +LCLW SLF T +VI ++
Sbjct: 173 EETLRSAKDVSEANGFAREVIKSNILCLWKSLFETSQPKVINLK 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,144,863
Number of Sequences: 28952
Number of extensions: 189629
Number of successful extensions: 531
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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