Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30655
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    27   3.1  
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.1  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   7.1  

>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -2

Query: 613 PKRGKNTDSIKENALSPEVAKLKKVEDTPAKVKVDMLNLNLVTKTRKHLKRGKRKS 446
           P R +  +  +   L  E  + KK+   PAK+K +  +     K +++ +R KRKS
Sbjct: 484 PYRDQVREQARRRRLEVEKTEPKKLA-RPAKIKNEAWSKQKEVKEKRNTRREKRKS 538


>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 637 DSSSSEKDPKRGKNTDSIKENALSPEVAKLKKVEDTPAKVKVDMLNLNLVTK-TRKHLKR 461
           D + S    + G   +S+KE + S EV+    +E    KV       N   K  +KHLK+
Sbjct: 43  DLTKSSSSKEEGIADNSLKEVS-SSEVSDNVGMEVDQPKVSTSGPRDNNRNKWAKKHLKK 101

Query: 460 GKR 452
           GKR
Sbjct: 102 GKR 104


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 625 SEKDPKRGKNTDSIKENALSPEVAKLKKVEDTPAKVKVDMLNLNLV 488
           S  DP   KN+ +I +     +     K ED P +   D+ NL L+
Sbjct: 732 SYTDPSYRKNSGAIYDKNDGTQKGLTPKSEDAPIRYLSDLSNLELL 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,020
Number of Sequences: 5004
Number of extensions: 22831
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)