Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30655
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1248 + 28685911-28687719                                         30   1.4  
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547...    29   2.4  
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983...    29   3.2  
11_06_0577 - 25158833-25162864                                         28   7.4  
02_05_1168 + 34651143-34651424,34651983-34652138,34652239-346523...    27   9.7  

>06_03_1248 + 28685911-28687719
          Length = 602

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 628 SSEKDPKRGKNTDSIKENALSPEVAKLKKVEDTPAKVKVDM 506
           +S  DP    N ++I E   S E  K KKV    +KVK  M
Sbjct: 506 ASSSDPATPLNEEAINEEGTSTETGKTKKVAFKGSKVKTAM 546


>03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,
            5478055-5478132,5478227-5478280,5478466-5478650,
            5478781-5480374,5480506-5480700,5480753-5480904,
            5481213-5481486,5481597-5481733,5482219-5482258,
            5482773-5483261,5483605-5484168
          Length = 1477

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 637  DSSSSEKDPKRGKNTDSIKENALSPEVAK 551
            +S SS K  K G+N    K N+L PE AK
Sbjct: 1018 ESGSSSKKKKSGRNHSDGKGNSLEPEYAK 1046


>01_06_0496 -
           29795490-29796638,29796811-29796870,29798168-29798371,
           29798739-29798984,29799375-29799464
          Length = 582

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = -2

Query: 634 SSSSEKDPKRGKNTDSIKENALSPEVAKLKKVEDTPAKVKVDMLNLNLVTKTRKHLKRGK 455
           SSS  K    GK        A+  E AKLK+     + V VD    N+  +  K +KR  
Sbjct: 238 SSSQPKKVADGKPQVRKASYAMETESAKLKRNVRKSSAVTVDSFQTNMTVEPEK-IKRNS 296

Query: 454 RK 449
           RK
Sbjct: 297 RK 298


>11_06_0577 - 25158833-25162864
          Length = 1343

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 544 KVEDTPAKVKVDMLNLNLVTKTRKHLKRGKRKSPLLK 434
           K+ D   K+KV ++   +V K + HL++ KR   +L+
Sbjct: 523 KIGDIKEKIKVQLVIQGIVDKIKDHLEKDKRTLIILQ 559


>02_05_1168 +
           34651143-34651424,34651983-34652138,34652239-34652346,
           34652778-34652888,34652985-34654421,34654598-34654852
          Length = 782

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 643 KRDSSSSEKDPKRGKNTDSIKENALSPEVAKLKKVEDTPAKVKVDMLNLNLVTKTR 476
           ++++   EK+    ++    KE  L+   AKLK +E   A  K + +N  ++ KT+
Sbjct: 295 QKENKLREKERNEAQSVLRKKEEELAQLRAKLKLIEGQGAAAKEEEINSKVMEKTQ 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,845,199
Number of Sequences: 37544
Number of extensions: 110061
Number of successful extensions: 345
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)