Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30655
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_19683| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_5158| Best HMM Match : PH (HMM E-Value=0.28)                        29   4.3  
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    28   5.7  
SB_864| Best HMM Match : Sulfotransfer_1 (HMM E-Value=6.4e-05)         28   7.5  

>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 14/19 (73%), Positives = 18/19 (94%)
 Frame = -3

Query: 219  NNEDLEKKLRERALKSMKK 163
            +NE+LEKKLRE+AL SM+K
Sbjct: 1239 DNENLEKKLREKALLSMRK 1257


>SB_11346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1706

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 16/64 (25%), Positives = 35/64 (54%)
 Frame = -2

Query: 634 SSSSEKDPKRGKNTDSIKENALSPEVAKLKKVEDTPAKVKVDMLNLNLVTKTRKHLKRGK 455
           S +  K P+R  +  +I   A  P  ++L+++ D+PA + ++M N    ++T   +  G+
Sbjct: 344 SPAPPKKPRRSPSKPAIPAPAYKPRSSRLRQLRDSPAPIDLEMDN---SSETADTVTSGE 400

Query: 454 RKSP 443
           ++ P
Sbjct: 401 KEEP 404


>SB_19683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 553 KLKKVEDTPAKVKVDMLNLNLVTKTRKHLKRGKRKSPLLKV 431
           K +KVE+ PAK  V  + L +  +  + LK  KRK   LKV
Sbjct: 64  KKRKVEEDPAKEVVISIGLKVWDENEEELKEKKRKRLPLKV 104


>SB_5158| Best HMM Match : PH (HMM E-Value=0.28)
          Length = 502

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -2

Query: 637 DSSSSEKDPKRGKNTDSIKE-NALSPEVAKLKKVEDTPAKVK--VDMLNLNLVTKTRKHL 467
           D   +     R +   +I+E N  + ++  +K  ED P+KVK   D        K  KH 
Sbjct: 223 DEGGNSGHQSRMRPVSTIEERNTTTRDIRSVKSSEDLPSKVKSTKDKEKSEKHDKQDKHE 282

Query: 466 KRGKR-KSPL 440
           KR K+ KSP+
Sbjct: 283 KRDKQNKSPV 292


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -2

Query: 637 DSSSSEKDPKRGKNTDSIKENALSPEVAKLKKVEDTPAKVKVDMLNLNLVTKTRKHLKRG 458
           DS SSE D + G N + + +     +  K KK   +P +V    + L+   K +KH  + 
Sbjct: 291 DSGSSEGDGRHGNNDEDVYDKD-DQKHKKPKKRHKSPERV----VRLSHKKKKKKHKSKH 345

Query: 457 KRKSPL 440
            RK  L
Sbjct: 346 SRKDKL 351


>SB_864| Best HMM Match : Sulfotransfer_1 (HMM E-Value=6.4e-05)
          Length = 524

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -2

Query: 625 SEKDPKRGKNTDSIKENALSPEVAKLKKVEDTPAKVKVDMLNLNLVTKTRK 473
           +E  PK  K+T+S  E  + PE  K  K +    K    M+   L T   K
Sbjct: 380 TENQPKTKKDTESQPEMKVDPEKKKQSKTDLKAKKYDAFMITQRLATLASK 430


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,975,320
Number of Sequences: 59808
Number of extensions: 146410
Number of successful extensions: 546
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)