Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30655
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical ...    28   5.0  

>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/44 (29%), Positives = 28/44 (63%)
 Frame = -2

Query: 592 DSIKENALSPEVAKLKKVEDTPAKVKVDMLNLNLVTKTRKHLKR 461
           +++KE     E  ++++ E+ P   + ++LN+ + T+T+K LKR
Sbjct: 8   NTMKEEQEEEERDEIEEKEEKPDAQQQELLNIRIPTQTKKSLKR 51


>AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical
           protein C33E10.6 protein.
          Length = 1014

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 601 KNTDSIKENALSPEVAKLKKVEDTPAKVKVDMLNLN 494
           KN+  I +N LS E++K+  V D P  V + +L+L+
Sbjct: 811 KNSTIIVDNLLSVEMSKISIVFDKPIYVALSILDLS 846


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,634,839
Number of Sequences: 27780
Number of extensions: 124861
Number of successful extensions: 485
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)